Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2889 ATGAAGCAGCATGTCCTAAACATTGGAAGTGATGATGCCACGGTTACAGTGGCAGTTGCGATGTTATCGTTGCTGTGCACATGTGGAGCAATAACACTAACCCCCAGCGCTAACGGTAACAGCAATCTTCACCCGTTGATCCTAATACCTGGCGCCGGAGGGAACCAACTAGAAGCTAAGTTGACCCAAGACTACAAAGCCTCTAGCTTCGTTTGCAACTCCTGGTACCCTCTTTTCAAGAAAAAGAATGGTTGGTTCAGACTCTGGTTCGATTCCTCTGTCCTCCTTTCTCCTTTCACCAAATGCTTCGCTGACCGCATGATGCTTCACTATAATCAAGACCGAGATGATTACTTTAATACCCCTGGYGTTCTCACCCGTGTCCCTCACTTTGGTTCCACCTCCTCCCTTCTTTATCTCAATCCTCGTCTTAAGTATGTGACGGAATATATGGCTTCCCTGGTAYATTCATTAGAAAAGCTTGGTTACATTGAAGGTGAAACACTGTTCGGAGCACCCTATGATTTTCGTTATGGTCTTGCAGGCGAAGGGCACCCATGTGAAGTGGGATCAAAGTTCCTTGAAGATCTCAAGAASTTGATAGAAGAAGCAAGCGCTTCAAACGGTGGGAAGGAAGTGATTCTTGTGTCCCACAGCTTAGGMGGTCTATTCGCCTTGGAACTCCTTAACCGAAACGACCCTTCATGGAGCAGGAAATTCATCAAACACTTGGTGGCACTTTCTGCACCATGGGGTGGTGCAATGGACGAAATGCTCACTTTTGCATCTGGCAACACTCTTGGTGTTCCCTTGGTGGATCCATTGATAGTTAGACCTCAGCAGAGAAGCTCCGAGAGTAACTTATGGCTTTTGCCTAATCCCAAAGTATATGGTCATCATCAAAAGTTGCTCATCACTSAAAATAGAAGCTATTCAGCACATGACATGCCTGATTTTCTCAWAGATATTGGTTTTCTGGAAGGGGTTTATCCTTATAAAACACGCATTTTGCCGTTAATAGAGAACCTTAAAGCACCGGAACAAGTTCCTATTACTTGTGTTATAGGGAGTGGGGTCAGWACCCCGGAGATTTTGTTTTACAGGAATGGTGATTTTGATGAAGGGCCAGAAATTTTGTATGGGGATGGTGATGGAACGGTGAACATGGTGAGCTTGCTGGCGCTTCAGTCATTAGTGGGAGAAGACAATAAAAACCAAAGCATCAAAGTGATTAAGATTGATGGTGTGTCTCATGTTTCAATACTAAAAGATGAAGTTGCACTTGAACAAATAATTGGTGAGATTAGTAGAATTAATTCTCATCACTCACATACTGGTTTTGGCAACATTTTTGTAGGTAGATAG 1365 0.4359 MKQHVLNIGSDDATVTVAVAMLSLLCTCGAITLTPSANGNSNLHPLILIPGAGGNQLEAKLTQDYKASSFVCNSWYPLFKKKNGWFRLWFDSSVLLSPFTKCFADRMMLHYNQDRDDYFNTPGVLTRVPHFGSTSSLLYLNPRLKYVTEYMASLVXSLEKLGYIEGETLFGAPYDFRYGLAGEGHPCEVGSKFLEDLKXLIEEASASNGGKEVILVSHSLGGLFALELLNRNDPSWSRKFIKHLVALSAPWGGAMDEMLTFASGNTLGVPLVDPLIVRPQQRSSESNLWLLPNPKVYGHHQKLLITXNRSYSAHDMPDFLXDIGFLEGVYPYKTRILPLIENLKAPEQVPITCVIGSGVXTPEILFYRNGDFDEGPEILYGDGDGTVNMVSLLALQSLVGEDNKNQSIKVIKIDGVSHVSILKDEVALEQIIGEISRINSHHSHTGFGNIFVGR* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2889 454 Gene3D alpha/beta hydrolase 371 437 IPR029058 -
Amo17g2889 454 Gene3D alpha/beta hydrolase 93 289 IPR029058 -
Amo17g2889 454 PANTHER LECITHIN:CHOLESTEROL ACYLTRANSFERASE FAMILY PROTEIN, EXPRESSED 25 438 - -
Amo17g2889 454 Pfam Lecithin:cholesterol acyltransferase 86 293 IPR003386 GO:0006629|GO:0008374
Amo17g2889 454 PANTHER LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED 25 438 - -
Amo17g2889 454 SUPERFAMILY alpha/beta-Hydrolases 39 435 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2889 Amo-Chr17 131015991 131018791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2889 7 439 Acyl Lipid Metabolism Gene Families AT1G27480 58.257 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2889 - - aip:107606353 911.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2889 17 131015991 131018791 Amo17g2889 17 131015991 131018791 ECH
Amo08g0848 08 14662581 14664945 Amo17g2889 17 131015991 131018791 hybridization