Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2846 ATGGATGAGGATTTTTCATTCATCCAGCCTCTTGATCTTATCACAAAGGACCCATATGAACTGCACAGTATAGTAAAGGCCAAAAAGGAAAACCAACGTCAAAATAAGCATGAATCAAACAAAATAACGAATGACTTAATTCAGGACAATGCTCGGGAGCACGTTCAAGAATTGGAAAAAGAGAAGAAAGAAAGGGAAAATGAACAAGGTTTGGAGAAAATGAAGCTAGATAAGGAAAGAGAACAAGAAAAGTGTGAACAAAAAGAACTACAACACCAAGATCAGAACCATGCTGAGAATCATGAAGATAAGACTACAGTTGAAAATCTAGAAAGTAAAGCACGCGGAGGGCCTGAGCCCATGGAGATCTCCCAAAGTTCCATTTCACTGCATAATGAAATTCCATCTTCTGATGTGAAAATTTTGGAAGGCCATACATCGGAGGTTTTTGCTTGTGCATGGAATCCATCTGGTTCTCTTCTCGCATCCGGATCTGGTGATTCAACGGCTCGAATTTGGAAAATACCTGATGGACCTTGTAACTCTTGCATGCATGATGAACCAGTAAATGTTGTGGTGCTGAGGCATTTTAAAGGAAGAACCAATGAAAAAAGCAAGGATGTGACAACACTTGACTGGAATGCAGATGGTACATTATTGGCAACTGGTTCCTATGATGGGCAAGCAAGAATATGGACTAAAGATGGAGAGTTGAAGAGTACGCTAAACAAGCATAAAGGTCCAATATTTTCCCTGAAGTGGAACAAGAAGGGGGATTATCTTCTTAGTGGAAGTGTAGATAAAACTGCTATTGTATGGGACATAAAGACTGGGGAATGGAAACAACAATTTGAATTTCACTCAGCCCCCACTCTTGACGTTGATTGGCGGAACAGTGTTTCATTTGCAACATGCTCCACTGATAATATGATATATGTATGCAAAGTTGGAGAGAATAGACCAATCAAAACTTTTGCAGGGCATCAGGGTGAAGTTAATGCCATTAAATGGGATCCATCGGGTACTTTGCTGGCGTCCTGCTCTGACGATCACACTGCAAAAATATGGAGTCTGAAACAGGACAAGCTTATACATGATTTGAAGGAACACGTCAAGGAGATATATACAATCCGGTGGAGCCCTGCAGGCTCTGGCTCTAGCAGTCCCAATCAACAATTAATACTAGCAAGTGCCTCTTTCGACTCTACGGTAAAGCTCTGGGATGTGGAACTAGGGAAAGTACTGTACAGCCTAAATGGTCACAGGGATCCTGTATATTCGATTGCATTCAGCCCAAATGGTGAGTATCTTGCTAGTGGATCGATGGATAAATGCATGCATATATGGTCGGTCAAGGAGGGAAAAATTGTGAAAACATATGCTGGCAATGGTGGGATCTTTGAAATTAGTTGGAACAAGGACGGGGATAAAGTTGCTGCTTGCTTTTCAAACAATATAGTTACTGTCTTGGATTTCCGAATGTAG 1485 0.4114 MDEDFSFIQPLDLITKDPYELHSIVKAKKENQRQNKHESNKITNDLIQDNAREHVQELEKEKKERENEQGLEKMKLDKEREQEKCEQKELQHQDQNHAENHEDKTTVENLESKARGGPEPMEISQSSISLHNEIPSSDVKILEGHTSEVFACAWNPSGSLLASGSGDSTARIWKIPDGPCNSCMHDEPVNVVVLRHFKGRTNEKSKDVTTLDWNADGTLLATGSYDGQARIWTKDGELKSTLNKHKGPIFSLKWNKKGDYLLSGSVDKTAIVWDIKTGEWKQQFEFHSAPTLDVDWRNSVSFATCSTDNMIYVCKVGENRPIKTFAGHQGEVNAIKWDPSGTLLASCSDDHTAKIWSLKQDKLIHDLKEHVKEIYTIRWSPAGSGSSSPNQQLILASASFDSTVKLWDVELGKVLYSLNGHRDPVYSIAFSPNGEYLASGSMDKCMHIWSVKEGKIVKTYAGNGGIFEISWNKDGDKVAACFSNNIVTVLDFRM* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2846 494 PRINTS G protein beta WD-40 repeat signature 261 275 IPR020472 -
Amo17g2846 494 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Amo17g2846 494 PRINTS G protein beta WD-40 repeat signature 395 409 IPR020472 -
Amo17g2846 494 Coils Coil 44 98 - -
Amo17g2846 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 232 IPR001680 GO:0005515
Amo17g2846 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 367 417 IPR001680 GO:0005515
Amo17g2846 494 PANTHER WD40 REPEAT PROTEIN 1 494 IPR045183 GO:0003714|GO:0016575
Amo17g2846 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 242 283 IPR001680 GO:0005515
Amo17g2846 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 418 455 - -
Amo17g2846 494 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 1 494 - -
Amo17g2846 494 MobiDBLite consensus disorder prediction 26 110 - -
Amo17g2846 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 359 - -
Amo17g2846 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 242 279 - -
Amo17g2846 494 SUPERFAMILY WD40 repeat-like 134 492 IPR036322 GO:0005515
Amo17g2846 494 CDD WD40 139 450 - -
Amo17g2846 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 175 IPR001680 GO:0005515
Amo17g2846 494 SMART WD40_4 190 233 IPR001680 GO:0005515
Amo17g2846 494 SMART WD40_4 360 408 IPR001680 GO:0005515
Amo17g2846 494 SMART WD40_4 277 315 IPR001680 GO:0005515
Amo17g2846 494 SMART WD40_4 453 491 IPR001680 GO:0005515
Amo17g2846 494 SMART WD40_4 135 174 IPR001680 GO:0005515
Amo17g2846 494 SMART WD40_4 235 274 IPR001680 GO:0005515
Amo17g2846 494 SMART WD40_4 318 357 IPR001680 GO:0005515
Amo17g2846 494 SMART WD40_4 411 450 IPR001680 GO:0005515
Amo17g2846 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 418 459 IPR001680 GO:0005515
Amo17g2846 494 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 366 IPR001680 GO:0005515
Amo17g2846 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 201 232 - -
Amo17g2846 494 MobiDBLite consensus disorder prediction 26 123 - -
Amo17g2846 494 Gene3D - 130 494 IPR015943 GO:0005515
Amo17g2846 494 Pfam WD domain, G-beta repeat 139 174 IPR001680 GO:0005515
Amo17g2846 494 Pfam WD domain, G-beta repeat 194 232 IPR001680 GO:0005515
Amo17g2846 494 Pfam WD domain, G-beta repeat 320 357 IPR001680 GO:0005515
Amo17g2846 494 Pfam WD domain, G-beta repeat 412 450 IPR001680 GO:0005515
Amo17g2846 494 Pfam WD domain, G-beta repeat 238 274 IPR001680 GO:0005515
Amo17g2846 494 Pfam WD domain, G-beta repeat 362 408 IPR001680 GO:0005515
Amo17g2846 494 ProSitePatterns Trp-Asp (WD) repeats signature. 395 409 IPR019775 -
Amo17g2846 494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 175 - -
Amo17g2846 494 ProSitePatterns Trp-Asp (WD) repeats signature. 261 275 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2846 Amo-Chr17 130525282 130529848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2846 322 492 Miscellaneous Gene Families AT5G08390 28.324 5.09e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2846 K04508 - gmx:100783690 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2846 17 130525282 130529848 Amo17g2846 17 130525282 130529848 ECH
Amo08g0816 08 14362383 14366997 Amo17g2846 17 130525282 130529848 hybridization