Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0816 ATGATCTCAATCTCTTCCTCTGAGTTGAACTACTTAGTCTTCCGTTATCTTCACGAATCTGGTTTTACCCATTCAGCATTTGCATTTGGGTATGAAGCAGGAATCGATAAAACAATAATTGATGTAAACATGGTCCCTCCTGGTGCTCTTGTTACGTTCATACAGAAGGGAATTCAATATCTTGAGCTGGAAGCAAACTTGAGTGGTAGCGATGCAGACATGGATGAGGATTTTTCATTCATCCAGCCTCTTGATCTTATCACAAAGGACCCATATGAACTGCACAGTATAGTAAAGGCCAAAAAGGAAAACCAACGTCAAAATAAGCATGAATCAAACAAAATAACAAATGACTTAATTCAGGACAATGCTCGGGAGCACGTTCAAGAATTGGAAAAAGAGAAGAAAGAAAGGGAAAATGAACAAGGTGTGGAGAAAATGAAGCTAGATAAGGAAAGAGAACAAGAAAAGTGTGAACAGAAAGAACTACAACACCAAGATCAGAACCATGCTGAGAATCATGAAGACAAGACTACAGTTGAAAATCTAGAAAGTAAAGCACGAGGAGGGCCTGAGCCCATGGAGATCTCCCAAAGTTCCATTTCACTGCATAATGAAATTCCATCTTCTGATGTGAAAATTTTGGAAGGCCATACATCGGAGGTTTTTGCTTGTGCATGGAATCCATCTGGTTCTCTTCTCGCATCCGGATCTGGTGATTCAACGGCTCGAATTTGGAAAATACCTGATGGACCTTGTAACTCTTGCATGCATGATGAACCAGTAAATGTTGTGGTGCTGAGGCATTTTAAAGGAAGAACCAATGAAAAAAGCAAGGATGTGACAACACTTGACTGGAATGCAGATGGTACATTATTGGCAACTGGTTCCTATGATGGGCAAGCAAGAATATGGACTAAAGATGGAGAGTTGAAGAGTACGCTRAACAAGCATAAAGGTCCAATATTTTCCCTGAAGTGGAACAAGAAGGGGGATTATCTTCTTAGTGGAAGTGTAGATAAAACTGCTATTGTATGGGACATAAAGACTGGGGAATGGAAACAACAATTTGAATTTCACTCAGCCCCCACTCTTGACGTTGATTGGCGGAACAGTGTTTCATTTGCAACATGCTCCACTGATAATATGATATATGTATGCAAAGTTGGAGAGAATAGACCAATCAAAACTTTTGCAGGGCATCAGGGTGAAGTTAATGCCATTAAATGGGATCCATCGGGTACTTTGCTGGCGTCCTGCTCTGACGATCACACTGCAAAAATATGGAGTCTGAAACAGGACAAGCTTATACATGATTTGAAGGAACACGTCAAGGAGATATATACAATCCGGTGGAGCCCTGCAGGCTCTGGTTCTAGCAGTCCCAATCAACAATTAACACTAGCAAGTGCCTCTTTCGACTCTACGGTAAAGCTCTGGGATGTGGAACTAGGGAAAGTACTGTACAGCCTAAATGGTCACAGGGATCCTGTATATTCGATTGCATTCAGCCCAAATGGTGAGTATCTTGCTAGTGGATCGATGGATAAATGCATGCATATATGGTCGGTCAAGGAGGGAAAAATTGTGAAAACATATGCTGGCAATGGTGGGATCTTTGAAATTAGTTGGAACAAGGACGGGGATAAAGTTGCTGCTTGCTTTTCAAACAATATAGTTACTGTCTTGGATTTCCGAATGTAG 1704 0.4114 MISISSSELNYLVFRYLHESGFTHSAFAFGYEAGIDKTIIDVNMVPPGALVTFIQKGIQYLELEANLSGSDADMDEDFSFIQPLDLITKDPYELHSIVKAKKENQRQNKHESNKITNDLIQDNAREHVQELEKEKKERENEQGVEKMKLDKEREQEKCEQKELQHQDQNHAENHEDKTTVENLESKARGGPEPMEISQSSISLHNEIPSSDVKILEGHTSEVFACAWNPSGSLLASGSGDSTARIWKIPDGPCNSCMHDEPVNVVVLRHFKGRTNEKSKDVTTLDWNADGTLLATGSYDGQARIWTKDGELKSTLNKHKGPIFSLKWNKKGDYLLSGSVDKTAIVWDIKTGEWKQQFEFHSAPTLDVDWRNSVSFATCSTDNMIYVCKVGENRPIKTFAGHQGEVNAIKWDPSGTLLASCSDDHTAKIWSLKQDKLIHDLKEHVKEIYTIRWSPAGSGSSSPNQQLTLASASFDSTVKLWDVELGKVLYSLNGHRDPVYSIAFSPNGEYLASGSMDKCMHIWSVKEGKIVKTYAGNGGIFEISWNKDGDKVAACFSNNIVTVLDFRM* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0816 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 305 IPR001680 GO:0005515
Amo08g0816 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 440 490 IPR001680 GO:0005515
Amo08g0816 567 Coils Coil 117 171 - -
Amo08g0816 567 SMART Lish 5 37 IPR006594 GO:0005515
Amo08g0816 567 PRINTS G protein beta WD-40 repeat signature 234 248 IPR020472 -
Amo08g0816 567 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Amo08g0816 567 PRINTS G protein beta WD-40 repeat signature 468 482 IPR020472 -
Amo08g0816 567 ProSitePatterns Trp-Asp (WD) repeats signature. 468 482 IPR019775 -
Amo08g0816 567 ProSitePatterns Trp-Asp (WD) repeats signature. 334 348 IPR019775 -
Amo08g0816 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 491 532 IPR001680 GO:0005515
Amo08g0816 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 274 305 - -
Amo08g0816 567 MobiDBLite consensus disorder prediction 101 183 - -
Amo08g0816 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 398 439 IPR001680 GO:0005515
Amo08g0816 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 491 528 - -
Amo08g0816 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 398 432 - -
Amo08g0816 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 315 352 - -
Amo08g0816 567 SMART WD40_4 263 306 IPR001680 GO:0005515
Amo08g0816 567 SMART WD40_4 308 347 IPR001680 GO:0005515
Amo08g0816 567 SMART WD40_4 526 564 IPR001680 GO:0005515
Amo08g0816 567 SMART WD40_4 433 481 IPR001680 GO:0005515
Amo08g0816 567 SMART WD40_4 391 430 IPR001680 GO:0005515
Amo08g0816 567 SMART WD40_4 484 523 IPR001680 GO:0005515
Amo08g0816 567 SMART WD40_4 208 247 IPR001680 GO:0005515
Amo08g0816 567 SMART WD40_4 350 388 IPR001680 GO:0005515
Amo08g0816 567 Gene3D - 203 567 IPR015943 GO:0005515
Amo08g0816 567 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 215 248 - -
Amo08g0816 567 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Amo08g0816 567 Pfam WD domain, G-beta repeat 435 481 IPR001680 GO:0005515
Amo08g0816 567 Pfam WD domain, G-beta repeat 485 523 IPR001680 GO:0005515
Amo08g0816 567 Pfam WD domain, G-beta repeat 311 347 IPR001680 GO:0005515
Amo08g0816 567 Pfam WD domain, G-beta repeat 267 305 IPR001680 GO:0005515
Amo08g0816 567 Pfam WD domain, G-beta repeat 212 247 IPR001680 GO:0005515
Amo08g0816 567 Pfam WD domain, G-beta repeat 393 430 IPR001680 GO:0005515
Amo08g0816 567 SUPERFAMILY WD40 repeat-like 207 565 IPR036322 GO:0005515
Amo08g0816 567 Gene3D - 2 90 - -
Amo08g0816 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 315 356 IPR001680 GO:0005515
Amo08g0816 567 MobiDBLite consensus disorder prediction 101 196 - -
Amo08g0816 567 Pfam LisH 8 33 IPR006594 GO:0005515
Amo08g0816 567 ProSiteProfiles Trp-Asp (WD) repeats profile. 215 248 IPR001680 GO:0005515
Amo08g0816 567 CDD WD40 212 523 - -
Amo08g0816 567 PANTHER F-BOX-LIKE/WD REPEAT-CONTAINING PROTEIN TBL1XR1 ISOFORM X1 4 567 - -
Amo08g0816 567 PANTHER WD40 REPEAT PROTEIN 4 567 IPR045183 GO:0003714|GO:0016575
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0816 Amo-Chr8 14362383 14366997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0816 395 565 Miscellaneous Gene Families AT5G08390 28.324 2.23e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0816 K04508 - gmx:100783690 944.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0816 08 14362383 14366997 Amo17g2846 17 130525282 130529848 hybridization