Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2796 ATGATTATTTATTACTTTTTGAAGGTCCTTTCATGGAATTATATGTTTCAAGATATACCCAAAAAATTACTACTTAAAAAACATATAAGCATTTCAATACTTCAAACACATTACGACGTAGTTGAGAAAGGGAGCACAATCGCGGCGATAGTAACGTCGTTGGGAGGTCCACCTGCCGCCGTCGGAATCGTTCGACTCTCAGGTCCTTCTGCGGTTTCCGTGGCGGGTCGAGTGTTTCGACCCGCCAAAAGGAGCAAGAACAATGATTGGAAACCGACGAGCCACGTGGTGGAGTACGGAGTCGTTTTGGCGGTGCCGATGCTGGCGCCAAAATCTTACACGCGCGAGGACGTTGTTGAGATTCAGTGTCATGGAAGTGAAGTGTGTCTGCGCCGAGTTCTCAGAACTTGCTTGGAAGCTGGAGCTACACTTGCCCAGCCAGGGGAGTTTACACTTCGTGCGTTTCTAAATGGTCGGTTGGATCTATCACAAGCTGAGAATGTTGGAAGGTTGATTACCGCCAAGTCTGTGGCTGCTGCAGATGCAGCACTGGCCGGAATCCAGGGTGGTTTCTCCTCTCTTGTAAGATCGTTGAGAATGCAGTGCATTGAGTTGCTCACTGAGATTGAAGCTCGTTTAGATTTTGAGGATGAGATGCCTCCTTTGGATTTGAATATTATTATGGATAAAATTCATAGCATGTCGCAAGATGTTGAGAGTGCATTGGAGGCAGAAAATTATGACAGGCTTCTGCAGTCTGGATTACAGATAGCAATTGTTGGCCGTCCAAATGTTGGCAAGTCAAGCCTTCTAAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTAATTGAAGCAAGTGTCAGTGTCAATGGTATCCCTATAACCCTTCTTGATACTGCAGGAATCAGGGACACTGATGATGTTGTGGAAAAGATTGGTGTAGAGAGATCAGAAGCTGTTGCTAGGGGTGCTGATCTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACTTCTGAAGACACCAAACTTCTAGAAAGGATTCAGTCTGCTAAGAGTTCAACTGGATCCTTGATCCCAGTAATACTTGCGGTCAACAAGATAGATTGCAATCCACGCGCTGAGACAGATTGGGACAGAGGATGTCAGAGTCATGATATCTTCAGTAAACGCGTGTTTACGTGTGCTGTTACTGGTCAAGGATTACAAGACCTAGAGAGGGCAGTACTAGAGCTTGTGGGACTTGATGCCATTCCTTCTGGGGGTCGCCAATGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCTCTTGAAAGGTTACAATCGTCAATAAAGGAGGAACTACCATTAGATTTTTGGACAATTGATTTGAGGGATGCTGCATTATCCCTTGGACAGATAAGTGGAGAAGATATATCTGAAGAAGTATTATCAAATATATTTGGGAAGTTCTGTATTGGTAAATAG 1512 0.4464 MIIYYFLKVLSWNYMFQDIPKKLLLKKHISISILQTHYDVVEKGSTIAAIVTSLGGPPAAVGIVRLSGPSAVSVAGRVFRPAKRSKNNDWKPTSHVVEYGVVLAVPMLAPKSYTREDVVEIQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVGRLITAKSVAAADAALAGIQGGFSSLVRSLRMQCIELLTEIEARLDFEDEMPPLDLNIIMDKIHSMSQDVESALEAENYDRLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVSVNGIPITLLDTAGIRDTDDVVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSAKSSTGSLIPVILAVNKIDCNPRAETDWDRGCQSHDIFSKRVFTCAVTGQGLQDLERAVLELVGLDAIPSGGRQWTVNQRQCEQLVRTKEALERLQSSIKEELPLDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFCIGK* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2796 503 PANTHER TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL 44 503 - -
Amo17g2796 503 Gene3D tRNA modification GTPase MnmE domain 2 160 503 IPR027368 -
Amo17g2796 503 PANTHER TRNA MODIFICATION GTPASE GTPBP3 44 503 - -
Amo17g2796 503 Gene3D Probable tRNA modification gtpase trme; domain 1 32 159 IPR027266 GO:0005515
Amo17g2796 503 Pfam 50S ribosome-binding GTPase 256 377 IPR006073 GO:0005525
Amo17g2796 503 Coils Coil 442 462 - -
Amo17g2796 503 TIGRFAM mnmE_trmE_thdF: tRNA modification GTPase TrmE 59 503 IPR004520 GO:0003924|GO:0005525|GO:0006400
Amo17g2796 503 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 254 424 IPR031168 -
Amo17g2796 503 Pfam MnmE helical domain 162 500 IPR025867 -
Amo17g2796 503 Pfam GTP-binding protein TrmE N-terminus 46 159 IPR018948 -
Amo17g2796 503 Gene3D - 255 431 IPR027417 -
Amo17g2796 503 CDD trmE 252 424 IPR031168 -
Amo17g2796 503 TIGRFAM small_GTP: small GTP-binding protein domain 255 382 IPR005225 GO:0005525
Amo17g2796 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 419 IPR027417 -
Amo17g2796 503 Hamap tRNA modification GTPase MnmE [mnmE]. 45 503 IPR004520 GO:0003924|GO:0005525|GO:0006400
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2796 Amo-Chr17 129510597 129514889 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2796 K03650 - gmx:100818096 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2796 17 129510597 129514889 Amo17g2796 17 129510597 129514889 ECH
Amo08g0770 08 13592020 13596703 Amo17g2796 17 129510597 129514889 hybridization