LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo08g0770	ATGATTATTTACTACTTTTTGAAGGTCCTTTCATGGAATTATATGTTTCAAGATATACCCAAAAAATTACTACTTAAAAAACATATAAGCATTTCAATACTTCAAACACATTACGAYGTAGTTGAGAAAGGGAGCACAATCGCGGCGATAGTAACGTCGTTGGGAGGTCCACCTGSCGCCGTCGGAATCGTTCGACTCTCAGGTCCTTCTGCGGTTTCCGTGGCGGGTCGAGTGTTTCGACCCGCCAAAAGGAGCAAGAACAATGATTGGAAACCGAYGAGCCACGTGGTGGAGTACGGAGTCGTTTTGGCGGTGCCGATGCTGGCGCCAAAATCTTACACGCGCGAGGACGTTGTTGAGATTCAGTGTCATGGAAGTGAAGTGTGTCTGCGCCGAGTTCTCAGAACTTGCTTGGAAGCTGGAGCTACACTTGCYCAGCCAGGRGAGTTTACRCTTCGTGCGTTTCTAAATGGTCGGTTGGATCTATCACAAGCTGAGAATGTTGGAAGGTTGATTACCGCCAAGTCTGTGGCTGCTGCAGATGCAGCACTGGCCGGAATCCAGGGTGGTTTCTCCTCTCTTGTAAGATCGTTGAGAATGCAGTGCATTGAGTTGCTTACTGAGATTGAAGCTCGTTTAGATTTTGAGGATGAGATGCCTCCTTTGGATTTGAATATTATTATGGATAAAATTCATAGCATGTCGCAAGATGTTGAGAGTGCATTGGAGGCAGAAAATTAYGACAGGCTTCTGCAGTCTGGATTACAGATAGCAATTGTTGGCCGTCCAAATGTTGGCAAGTCAAGCCTTCTAAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTRATTGAAGCAAGTGTCAGTGTCAATGGTATCCCTATAACCCTTCTTGATACTGCAGGAATCAGGGACACTGATGATGTTGTGGAAAAGATTGGTGTAGAGAGATCAGAAGCTGTTGCTAGGGGTGCTGATCTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACTTCTGAAGACACCAAACTTCTAGAAAGGATTCAGTCTGCTAAGAGTTCAACTGGATCCTTGATCCCAGTAATACTTGCGGTCAACAAGATAGATTGCAATCCACGCGCTGAGACAGATTGGGACAGAGGATGTCAGAGTCATGATATCTTCAGTAAACGCGTGTTTACGTGTGCTGTTACYGGTCAAGGATTACAAGACCTAGAGAGGGCAGTACTGGAGCTTGTGGGACTTGATGCCATTCCTTCTGGGGGTCGCCAATGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCTCTTGAAAGGTTACAATCGTCAATAAAGGAGGAACTACCATTAGATTTTTGGACAATTGATTTGAGGGATGCTGCATTATCCCTTGGACAGATAAGTGGAGAAGATATATCTGAAGAAGTATTATCAAATATATTTGGGAAGTTCTGTATTGGTAAATAG	1512	0.4438	MIIYYFLKVLSWNYMFQDIPKKLLLKKHISISILQTHYDVVEKGSTIAAIVTSLGGPPXAVGIVRLSGPSAVSVAGRVFRPAKRSKNNDWKPXSHVVEYGVVLAVPMLAPKSYTREDVVEIQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVGRLITAKSVAAADAALAGIQGGFSSLVRSLRMQCIELLTEIEARLDFEDEMPPLDLNIIMDKIHSMSQDVESALEAENYDRLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVSVNGIPITLLDTAGIRDTDDVVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSAKSSTGSLIPVILAVNKIDCNPRAETDWDRGCQSHDIFSKRVFTCAVTGQGLQDLERAVLELVGLDAIPSGGRQWTVNQRQCEQLVRTKEALERLQSSIKEELPLDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFCIGK*	504

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo08g0770	503	Hamap	tRNA modification GTPase MnmE [mnmE].	45	503	IPR004520	GO:0003924\|GO:0005525\|GO:0006400
	Amo08g0770	503	TIGRFAM	mnmE_trmE_thdF: tRNA modification GTPase TrmE	60	503	IPR004520	GO:0003924\|GO:0005525\|GO:0006400
	Amo08g0770	503	Pfam	GTP-binding protein TrmE N-terminus	46	159	IPR018948	-
	Amo08g0770	503	Gene3D	tRNA modification GTPase MnmE domain 2	160	503	IPR027368	-
	Amo08g0770	503	PANTHER	TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL	44	503	-	-
	Amo08g0770	503	Pfam	50S ribosome-binding GTPase	256	377	IPR006073	GO:0005525
	Amo08g0770	503	Coils	Coil	442	462	-	-
	Amo08g0770	503	TIGRFAM	small_GTP: small GTP-binding protein domain	255	382	IPR005225	GO:0005525
	Amo08g0770	503	PANTHER	TRNA MODIFICATION GTPASE GTPBP3	44	503	-	-
	Amo08g0770	503	ProSiteProfiles	TrmE-type guanine nucleotide-binding (G) domain profile.	254	424	IPR031168	-
	Amo08g0770	503	Pfam	MnmE helical domain	162	500	IPR025867	-
	Amo08g0770	503	Gene3D	Probable tRNA modification gtpase trme; domain 1	32	159	IPR027266	GO:0005515
	Amo08g0770	503	Gene3D	-	255	431	IPR027417	-
	Amo08g0770	503	CDD	trmE	252	424	IPR031168	-
	Amo08g0770	503	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	112	419	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo08g0770	Amo-Chr8	13592020	13596703	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo08g0770	K03650		-	gmx:100818096	781.171

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo08g0770	08	13592020	13596703	Amo17g2796	17	129510597	129514889	hybridization