Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2754 ATGGTTTTATGTCTCTTACCAGTTCTTTCCCCCGAGTTGAGACCCATTATTCAAATCGATGGGGAAAAGTTAATGAGCTTAGATATTAATGAACTCTATCGAAGAGTTATCTATGGGAACAATACTCTTATTGATCTATTAACAATAAGTATATCTACGCCAAGCGAATTAGTAATGTGCCAGAAGAAATTGGTACAAGAAGCCGTGGATACGCTACTGGATAATGGAATCCGCGGGCAACCGATGAGGGATGTCAGGAATGTTGGGCTGAGGAAAACTCAGATGGACAGGCCCACAAAAACCCAGGCCCATAAAGAAGGTCTTTTCTTGCTGACTCATCATCGGCTTCTTCCTTCCCTTACTGAGCAGCTGCAATCTTTCAATCTGCAAACGCTTCCTTTTCCCTTCGCCATGCCTCTTTCAAAGCAACAACTCCTTTCTCGTTTACAGGAACTTCAGATCGAGTTTTCTCGTTACGAGCATCCTGTTGTTTTGACTGTTGAGGCTCAGGCAAAGTATGTTGGACATTTGGGGGGAGGATTGAGTAAAAATTTGTTTTTGAAGGACAAGAAAAACAGATTTTATATCGTTTCTGCTTTAGCTGATACCAAGGTAGATCTTAAAGTGCTATCTCAGCGGCTTGGTTTAGGAAAAGGGGGTCTTAGAATGGCACCTGAAGAGGCTTTGGGTGAAATACTTCAGGTGTCTCTGGGTTGTGTTACTCCATTTGCGTTAGTGAATGAATCAGCACGAGATGTTTCACTTTTATTGGATCAAGGATTCAAGACACAGACGCACTGCTTCTTCCACCCATTGTCAAATGACATGTCCATATCTCTAAATGCAAGTGGTCTTGACAAATTTCTTAAATCAATAGGAAGAAATCCCTCATATGTTGATTTGGAGGAGTCACCACCTGATTTAGCTTGGATCCTTCATCTTTCTAATGCAGGCAAAGCCGTCAAGCCAGCTGTTAGTGAGAAAAATGCAAAGGGGGCACCAGTAAAAAATGAACGTTTATCAAGCTCCTCAGCTAATGTTGGGCAATTCGTTGAGGAGATTTTGCAAAAAACATCTGAATTAGTGCTTTTGCAGATCAATGAAGGAAATATAAAGCAACATGGAGAGCAGCTTGCTACCGTGGTATCCGACAATTTACGGAAAAACCTGAGCTCAGATTTCAAAAACCTTGCTATGATATTTAAGAACACCGCATACACAGAAGGGTTCCATGCTGGTACTCACCATCAGCGCAGGGGCTTTTGA 1266 0.4194 MVLCLLPVLSPELRPIIQIDGEKLMSLDINELYRRVIYGNNTLIDLLTISISTPSELVMCQKKLVQEAVDTLLDNGIRGQPMRDVRNVGLRKTQMDRPTKTQAHKEGLFLLTHHRLLPSLTEQLQSFNLQTLPFPFAMPLSKQQLLSRLQELQIEFSRYEHPVVLTVEAQAKYVGHLGGGLSKNLFLKDKKNRFYIVSALADTKVDLKVLSQRLGLGKGGLRMAPEEALGEILQVSLGCVTPFALVNESARDVSLLLDQGFKTQTHCFFHPLSNDMSISLNASGLDKFLKSIGRNPSYVDLEESPPDLAWILHLSNAGKAVKPAVSEKNAKGAPVKNERLSSSSANVGQFVEEILQKTSELVLLQINEGNIKQHGEQLATVVSDNLRKNLSSDFKNLAMIFKNTAYTEGFHAGTHHQRRGF* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2754 421 SMART rpolaneu7 1 269 IPR006592 GO:0003677|GO:0003899|GO:0006351
Amo17g2754 421 Pfam Aminoacyl-tRNA editing domain 161 287 IPR007214 GO:0002161
Amo17g2754 421 Pfam RNA polymerase Rpb1, domain 1 1 82 IPR007080 GO:0003677|GO:0003899|GO:0006351
Amo17g2754 421 Gene3D - 137 306 IPR036754 GO:0002161
Amo17g2754 421 SUPERFAMILY YbaK/ProRS associated domain 139 302 IPR036754 GO:0002161
Amo17g2754 421 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 1 82 - -
Amo17g2754 421 PANTHER YBAK DOMAIN-CONTAINING PROTEIN 138 311 IPR040285 -
Amo17g2754 421 PANTHER YBAK DOMAIN-CONTAINING PROTEIN 317 418 IPR040285 -
Amo17g2754 421 CDD PrdX_deacylase 142 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2754 Amo-Chr17 128667551 128672743 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2754 - - ahf:112764287 600.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2754 17 128667551 128672743 Amo17g2754 17 128667551 128672743 ECH
Amo08g0696 08 12426071 12431141 Amo17g2754 17 128667551 128672743 hybridization