Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2720 ATGGATGTGAAAGGAACAAGTGGGGTTGTTCCATTGAGGAAGGTGTTGTTTCTGGTTCTAATCCTTTGTGCAATTTTCTCAGTTTCTTTGTCAAAAGTGAATGATACAAATGATCAGATTCTCAACGCCAAGAAGCCACAACCAAAACCCGCAGCTCCTTCTAGATCATCTGGTCACACTTTTCATTTCGCCATTCAAGGGAATGTCTATCCTCTTGGATATTATACGGTGAAAGTGGCAATTGGAAATCCACCTCAATTATACGACCTTGACATTGACTCTGGTAGTGATCTCACTTGGGTTCAGTCCAAATCCTGTAAGACCTGCACACCTCGTTCACAATATTATCCGTATAACCCCAACAGTAACATCCAATGCAAAGAACCCCTGTGTGCTGCGCTAAATAGAAACTGCGCTCCACCAACTGGGCCATGTAAATATAAAATCGAGTATGCAGACAATGAATTTTGTTCAGGGGTGCTTGTTAGGGACTTTATTTCCTTTAGATTAGACGATGGCTCTATTCTACATCCTCAACTTGGCTTCGGGAGTGGATTTGATCAAACACCTTCTAATCATCATCATTCCTCGCATATCAAAACGGCGGGKGTGTTTGGCCTTGGCAATGGCAAGACAAGCATTTTGTCTCAGCTTTCTTCTCTGGGCTACATTCRCAATGTCTTTGGCCATTGCTTGAGTTCCAAAGGAGGAGGTCGTTTATTCCTTGGTGATGATATTAAAACCTCCAAGACTCTTGTTTGGACACCTATCTTGCGCAGTTCCTCCTCCTCCAATATAGAACACTACAGGGCAGGCCCTGTAGATTTATTGTTCAATGGGAAGCAAGCTGTTAATGGTCTTGAAGTTATTTTTGACAGTGGAAGCACATACACATACCTCAATAAAAAAGCTTATAATGTKTTGTTTGGTCTGATAAATAATGACTTAGGAAATAAGGTGCAGAGAGCTACTGAGGATACAACACTGGCAATATGTTGGAAGGGTCAAAATCTTTTTGGATATTTCAAAAACATAGTACTGAACTTCCCAAAAACAAAATCTCAGTTCGTACTAACACCACAATCTTATCTCATTGTCTCGGAACGTCATAATACMTGCTTAGGGATTTTAGATGGCTCAGAAGAACTTGGAGATATTAACATAATTGGAGACGTCTCTTTTCAAGATAAGCTAGTGGTTTATGACAACGAGAAGATGCAGATTGGATGGGTTCCTGACAATTGTGCTACGTCTTCATTTACAAATGCCAAATCATTACGAGTTCATCACAGAGGAAATATTTTGTCCTAA 1311 0.4035 MDVKGTSGVVPLRKVLFLVLILCAIFSVSLSKVNDTNDQILNAKKPQPKPAAPSRSSGHTFHFAIQGNVYPLGYYTVKVAIGNPPQLYDLDIDSGSDLTWVQSKSCKTCTPRSQYYPYNPNSNIQCKEPLCAALNRNCAPPTGPCKYKIEYADNEFCSGVLVRDFISFRLDDGSILHPQLGFGSGFDQTPSNHHHSSHIKTAGVFGLGNGKTSILSQLSSLGYIXNVFGHCLSSKGGGRLFLGDDIKTSKTLVWTPILRSSSSSNIEHYRAGPVDLLFNGKQAVNGLEVIFDSGSTYTYLNKKAYNVLFGLINNDLGNKVQRATEDTTLAICWKGQNLFGYFKNIVLNFPKTKSQFVLTPQSYLIVSERHNTCLGILDGSEELGDINIIGDVSFQDKLVVYDNEKMQIGWVPDNCATSSFTNAKSLRVHHRGNILS* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2720 436 Pfam Xylanase inhibitor C-terminal 288 410 IPR032799 -
Amo17g2720 436 Pfam Xylanase inhibitor N-terminal 75 244 IPR032861 -
Amo17g2720 436 PRINTS Pepsin (A1) aspartic protease family signature 387 402 IPR001461 GO:0004190|GO:0006508
Amo17g2720 436 PRINTS Pepsin (A1) aspartic protease family signature 81 101 IPR001461 GO:0004190|GO:0006508
Amo17g2720 436 PRINTS Pepsin (A1) aspartic protease family signature 289 300 IPR001461 GO:0004190|GO:0006508
Amo17g2720 436 Gene3D Acid Proteases 50 242 IPR021109 -
Amo17g2720 436 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 14 417 - -
Amo17g2720 436 ProSiteProfiles Peptidase family A1 domain profile. 75 411 IPR033121 -
Amo17g2720 436 Gene3D Acid Proteases 243 423 IPR021109 -
Amo17g2720 436 MobiDBLite consensus disorder prediction 40 59 - -
Amo17g2720 436 SUPERFAMILY Acid proteases 68 416 IPR021109 -
Amo17g2720 436 PANTHER ASPARTYL PROTEASES 14 417 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2720 Amo-Chr17 127946349 127950346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2720 55 415 Miscellaneous Gene Families AT1G44130 46.719 6.34e-106 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2720 - - gmx:100783194 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0621 08 11060720 11064395 Amo17g2720 17 127946349 127950346 hybridization