Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0621 ATGGATGTGAAAGGAACAAGTGGGGTTGTTCCATTGAGGAAGGTGTTGTTTCTTGTTCTAATCCTTTGTGCAATTTTCTCAGTTTCTTTGTCAAAAGTGAATGATACAAATGATCAGATTCTCAACGCCAAGAAGCCACAACCAAAACCCGCAGCTCCTTCTAGATCATCTGGCCACACTTTTCATTTCGCCATTCAAGGGAATGTCTATCCTCTTGGATATTATACAGTGAAAGTGGCAATTGGAAATCCACCTCAATTATACGACCTTGACATTGACTCTGGTAGTGATCTCACTTGGGTTCAGTCCAAACCCTGTAAGACCTGCACACCTCGTTCACAATATTATCCGTATAACCCCAACAGTAACATCCAATGCAAAGAACCCCTGTGTGCTGCGCTAAATAGAAACTGCGTTCCACCAACTGGGCCATGTAAATATAAAATCGAGTATGCAGACAATGAATTTTGTTCAGGGGTGCTTGTTAGGGACTTTATTTCCTTTAGATTAGACGATGGCTCTGTTCTACATCCTCAACTTGGCTTCGGGAGTGGATTTGATCAAACACCTTCTAATCATCATCATTCCTCGCATATCAAAACGGCGGGTGTGTTTGGCCTTGGCAATGGCAAGACAAGCATTTTGTCTCAGCTTTCTTCTCTGGGCTACATTCGCAATGTCTTTGGCCATTGCTTGAGTTCCAAAGGAGGAGGTCGTTTATTCCTTGGTGATGATGATATTAAAACCTCCAAGACTCTTGTTTGGACACCTATCTTGCGCAGTTCCTCCTCCTCCAATATAGAACACTACAGGGCAGGTCCTGTAGATTTATTGTTCAATGGGAAGCAAGCTGTTAATGGTCTTGAAGTTGTTTTTGACAGTGGAAGCACATACACATACCTCAATAAAAAAGCTTATAATGTTTTGTTTGGTCTGATAAATAATGACTTAGGAAATAAGGTGCAGAGAGCTACTGAGGATACAACACTGGCAATATGTTGGAAGGGTCAAAATCTTTTTGGATATTTCAAAAACATAGTACTGAACTTCCCAAAAACAAAATCTCAGTTCGTACTAACACCACAATCTTATCTCATTGTCTCGGAACGTCATAATACCTGCTTAGGGATTTTAGATGGCTCAATAGAAGAACTTGGAGATACTAACATAATTGGAGACGTCTCTTTTCAAGATAAGCTAGTGGTTTATGACAACGAGAAGATGCAGATTGGATGGGTTCCTGACAATTGTGCTACGTCTCCATTTACAAATGCCAAATCATTACGAGTTCATCACAGAGGAAATATTTTGTCCTAA 1317 0.4055 MDVKGTSGVVPLRKVLFLVLILCAIFSVSLSKVNDTNDQILNAKKPQPKPAAPSRSSGHTFHFAIQGNVYPLGYYTVKVAIGNPPQLYDLDIDSGSDLTWVQSKPCKTCTPRSQYYPYNPNSNIQCKEPLCAALNRNCVPPTGPCKYKIEYADNEFCSGVLVRDFISFRLDDGSVLHPQLGFGSGFDQTPSNHHHSSHIKTAGVFGLGNGKTSILSQLSSLGYIRNVFGHCLSSKGGGRLFLGDDDIKTSKTLVWTPILRSSSSSNIEHYRAGPVDLLFNGKQAVNGLEVVFDSGSTYTYLNKKAYNVLFGLINNDLGNKVQRATEDTTLAICWKGQNLFGYFKNIVLNFPKTKSQFVLTPQSYLIVSERHNTCLGILDGSIEELGDTNIIGDVSFQDKLVVYDNEKMQIGWVPDNCATSPFTNAKSLRVHHRGNILS* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0621 438 Pfam Xylanase inhibitor C-terminal 289 412 IPR032799 -
Amo08g0621 438 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 90 101 IPR001969 GO:0004190|GO:0006508
Amo08g0621 438 Gene3D Acid Proteases 244 425 IPR021109 -
Amo08g0621 438 SUPERFAMILY Acid proteases 68 418 IPR021109 -
Amo08g0621 438 PANTHER ASPARTYL PROTEASES 14 419 IPR001461 GO:0004190|GO:0006508
Amo08g0621 438 ProSiteProfiles Peptidase family A1 domain profile. 75 413 IPR033121 -
Amo08g0621 438 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 14 419 - -
Amo08g0621 438 PRINTS Pepsin (A1) aspartic protease family signature 81 101 IPR001461 GO:0004190|GO:0006508
Amo08g0621 438 PRINTS Pepsin (A1) aspartic protease family signature 290 301 IPR001461 GO:0004190|GO:0006508
Amo08g0621 438 PRINTS Pepsin (A1) aspartic protease family signature 389 404 IPR001461 GO:0004190|GO:0006508
Amo08g0621 438 Pfam Xylanase inhibitor N-terminal 75 244 IPR032861 -
Amo08g0621 438 Gene3D Acid Proteases 50 243 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0621 Amo-Chr8 11060720 11064395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0621 55 423 Miscellaneous Gene Families AT1G44130 46.392 1.11e-106 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0621 - - gmx:100783194 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0621 08 11060720 11064395 Amo17g2720 17 127946349 127950346 hybridization