Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2698 ATGAACGCTTTAAAAGCTAAAGAGTTCTATCGACGAGATGTAGAGTACATAGTCCGAGATGGGAAGGCTTTAATTATCAATGAGCTGACAGGAAGAGTTGAAGAGAAACGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCCGTTGTTGTGGCACAAATCACTTACCAGTCATTATTCAAGCTCTATCCAAAATTGTCAGGAATGACTGGGACTGCAAAAACAGAAGAGAGAGAATTCTTAAAAATGTTCCAGATGCCAGTCATTGAAGTGCCCACAAATCTTCCTAATATTCGTAAAGATCTTCCTATTCAAGCTTTCGCCACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTAGACAAGGCCGTCCTATTTTAGTTGGGACAACTAGTGTAGAAAATTCTGAACTTTTGGCTGGTCTGCTTTGGGAGTGGAATATTCCCCACAATGTCCTGAATGCTCGACCTAAGTATGCTGCAAGAGAAGCTGAAATTGTTGCACAGGCAGGACGCAAACATGCCATTACCATCTCTACAAATATGGCAGGCAGGGGCACGGATATAATCCTTGGAGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGATAGCGTAATTCATTTATTGACACAACAGGTTCCAAATGTTGAACTTGCTAGTGAGACTGTTTCGCGACAGGTGCTTCCAAAGATAAAGGTTGGATCATCATCAATGGCCTTACTGGCTAAGGCAACCTTAATGGCCAAATATGTCTCGAAAAGTGAGGGTAGAAACTGGACATATCAGAAGGCTAAATCCTTGATCACAGAGGCTATTCAATTTAGTCTGTCATATAGTTTTGAGGAGCTGGAGGAGCTTGCTAATGAAGATTCTGAATTTTACCCTCTTGGTCCAACAGTAGCACTTGCCTATGTGTCAGTTCTGAAGGATTGTGAAGAGCACTGTTTGCATGAAGGCTCTGAAGTTAAAAGGCTTGGTGGCCTTCATGTAATTGGTACATCTTTACATGAGTCCCGGAGAATAGATAACCAGCTCCGTGGCAGAGCAGGAAGGCAGGGAGATCCAGGTTCAACACGATTTATGGTTAGCTTGCAGGACGAGATGTTTCAAAAGTTCAATTTTGATACGGAATGGGCTGTCAGACTTATATCAAAGATTACAAATGATGAGGATATGCCAATTGAGGGTGATGCCATTGTGAAGCAGCTCTTGGGGTTGCAAATCAATGCAGAGAAGTTCTTCTTCAGCATAAGAAAGAGCCTAGTTGAATTTGATGAAGTATTGGAGGTGCAGCGAAAGCATGTTTATGATCTAAGGCAGTTGATCTTGACTGGAGATGATGAAAGCTGTTCCCAACACATATTCCAGTACCTGCAAGCAGTTGTGGATGAGATTGTCTTCAGTAACATCAATCCAATGAAGCATCCATGTACCTGGAGTTTGAGTAAGCTCTTGAAAGAGTTTATGACAATTGGTGGAAAGCTGCTTCATGAATCTTTTGGAGGGATCACCGACGACTCTTTGTTAAACTCACTTGGGCAACTGAATGATGCGGGTTCCATTGATATTGTCAACTTTTCCCTTCCAAATCTGCCCACACCTCCAAATGCATTCAGGGGAATCCGCAGGAAAAGTTCTTCGTTGAGACGTTGGCTTGTTATTTGCTCTGATGATCTAATTGAGAACGGGAAGTATCGGACAACATCTAATCTCCTCCGGAAATATCTTGGAGATTTTCTAATTGCTTCATATCTAAATGTTGTTGAAGAGTCTGGTTATGAAGATAAATATGTCAAGGAAATTGAGAGAGCTGTTCTTTTGAAAACTCTTGATTGCTTCTGGAGAGATCACCTTGTAAACATGAATCGGCTCAGCTCTGCGGTGAATATAAGGAGCTTTGGGCACAGAAACCCTCTTGAAGAGTACAAAATTGACGGTTGCCGTTTTTTCATCTCAATGCTTAGTGCAACAAGGAGGTTAACTGTAGAAGCGCTGTTACAGCATTGGTCATCTCCAATGGAATCACTTGAACTATCTTGA 2094 0.4217 MNALKAKEFYRRDVEYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEREFLKMFQMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFRQGRPILVGTTSVENSELLAGLLWEWNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLAREIIEDSVIHLLTQQVPNVELASETVSRQVLPKIKVGSSSMALLAKATLMAKYVSKSEGRNWTYQKAKSLITEAIQFSLSYSFEELEELANEDSEFYPLGPTVALAYVSVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDMPIEGDAIVKQLLGLQINAEKFFFSIRKSLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIFQYLQAVVDEIVFSNINPMKHPCTWSLSKLLKEFMTIGGKLLHESFGGITDDSLLNSLGQLNDAGSIDIVNFSLPNLPTPPNAFRGIRRKSSSLRRWLVICSDDLIENGKYRTTSNLLRKYLGDFLIASYLNVVEESGYEDKYVKEIERAVLLKTLDCFWRDHLVNMNRLSSAVNIRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALLQHWSSPMESLELS* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2698 697 Gene3D - 107 413 IPR027417 -
Amo17g2698 697 ProSiteProfiles SecA family profile. 1 413 IPR014018 -
Amo17g2698 697 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 1 695 IPR000185 GO:0005524|GO:0006605|GO:0006886
Amo17g2698 697 SUPERFAMILY Helical scaffold and wing domains of SecA 584 694 IPR036266 -
Amo17g2698 697 Gene3D - 1 58 - -
Amo17g2698 697 SUPERFAMILY Helical scaffold and wing domains of SecA 417 514 IPR036266 -
Amo17g2698 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 105 IPR027417 -
Amo17g2698 697 PRINTS SecA protein signature 29 51 IPR000185 GO:0005524|GO:0006605|GO:0006886
Amo17g2698 697 PRINTS SecA protein signature 103 116 IPR000185 GO:0005524|GO:0006605|GO:0006886
Amo17g2698 697 PRINTS SecA protein signature 66 83 IPR000185 GO:0005524|GO:0006605|GO:0006886
Amo17g2698 697 Pfam SecA DEAD-like domain 49 91 IPR011115 GO:0005524|GO:0016020|GO:0017038
Amo17g2698 697 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 1 695 - -
Amo17g2698 697 ProSitePatterns SecA family signature. 192 207 IPR020937 GO:0006605|GO:0006886|GO:0016020
Amo17g2698 697 SMART SecA_DEAD_2 1 92 IPR011115 GO:0005524|GO:0016020|GO:0017038
Amo17g2698 697 SMART SecA_PP_bind_2 1 48 IPR011130 GO:0016020|GO:0017038
Amo17g2698 697 Gene3D Helical scaffold and wing domains of SecA 560 688 - -
Amo17g2698 697 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 394 IPR027417 -
Amo17g2698 697 Gene3D Helical scaffold and wing domains of SecA 416 522 - -
Amo17g2698 697 SUPERFAMILY Pre-protein crosslinking domain of SecA 1 57 IPR036670 GO:0016020|GO:0017038
Amo17g2698 697 CDD SF2_C_secA 110 381 IPR044722 -
Amo17g2698 697 Pfam SecA preprotein cross-linking domain 2 48 IPR011130 GO:0016020|GO:0017038
Amo17g2698 697 Pfam SecA Wing and Scaffold domain 411 685 IPR011116 GO:0016020|GO:0017038
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2698 Amo-Chr17 127389831 127396235 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2698 K03070 - gmx:100793437 1242.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0663 08 11773433 11781842 Amo17g2698 17 127389831 127396235 hybridization