Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0663 ATGAGCTTGAACTACTGGGTTGTTCGTGATTACTACCGCCTTGTTAGCTCTGTTAACTCCTTCGAGGCCCACATTCAGAAACTCTCCGACGAACAGTTAACGGCCAAGACGGAGGAGTTTCGCAGGAGGCTCGGACGTGGCGAGACCCTTGGAGATATTCAAGCTGAGGCGTTTGCTGTTGTTCGTGAAGCTGCATGGAGGAAGCTTGGGATGCGCCATTTTGATGTTCAGATTATTGGTGGGGCAGTGCTGCATGATGGGTCAATTGCCGAGATGAAAACAGGGGAGGGGAAAACGTTGGTTTCCACGTTAGCAGCGTATCTTAATGCCCTCACTGGTGAGGGTGTTCATGTGGTAACCGTCAATGATTATTTAGCTCAGCGTGATTCTGAATGGATGGGGCGTGTTCATTGCTTCTTAGGTCTTTCTGTAGGCCTTATTCAGAAGGGGATGAATGCTGCAGAGCGGAGATCCAACTATAGATGTGATATAACATATACCAATAACTCTGAACTTGGCTTTGATTATTTACGAGATAATCTTGCTGGAAATAGGGAAGACCTTGTGATGAGATGGCCAAAACCATTTCATTTTGCAATTGTTGATGAAGTGGATTCTGTCCTGATAGATGAAGGAAGAAATCCTTTGTTAATAAGCGGTGAGGCTAGTAAGGATGCTGCACGATATCCTGTTGCTGCAAAAGTAGCTGAACTGCTTGTGCAGGGCACTCATTATAACGTGGAGCTTAAAAATGAGTCAGTGGAGTTGACTGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTTGAAACCAATGACCTTTGGGATGAAAATGATCCCTGGGCTAGGTTTGTGATGAACGCTTTAAAAGCTAAAGAGTTCTATCGACGAGATGTAGAGTACATAGTCCGAGATGGGAAGGCTTTAATTATCAATGAGCTGACAGGAAGAGTTGAAGAGAAACGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCCGTTGTTGTGGCACAAATCACTTACCAGTCATTATTCAAGCTCTATCCAAAATTGTCAGGAATGACTGGGACTGCAAAAACAGAAGAGAGAGAATTCTTAAAAATGTTCCAGATGCCAGTCATTGAAGTGCCCACAAATCTTCCTAATATTCGTAAAGATCTTCCTATTCAAGCTTTCGCCACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTAGACAAGGCCGTCCTATTTTAGTTGGGACAACTAGTGTAGAAAATTCTGAACTTTTGGCTGGTCTGCTTTGGGAGTGGAATATTCCCCACAATGTCCTGAATGCTCGACCTAAGTATGCTGCAAGAGAAGCTGAAATTGTTGCACAGGCAGGACGCAAACATGCCATTACCATCTCTACAAATATGGCAGGCAGGGGCACGGATATAATCCTTGGAGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGATAGCGTAATTCATTTATTGACACAACAGGTTCCAAATGTTGAACTTGCTAGTGAGACTGTTTCGCGACAGGTGCTTCCAAAGATAAAGGTTGGATCATCATCAATGGCCTTACTGGCTAAGGCAACCTTAATGGCCAAATATGTCTCGAAAAGTGAGGGTAGAAACTGGACATATCAGAAGGCTAAATCCTTGATCACAGAGGCTATTCAATTTAGTCTGTCATATAGTTTTGAGGAGCTGGAGGAGCTTGCTAATGAAGATTCTGAATTTTACCCTCTTGGTCCAACAGTAGCACTTGCCTATGTGTCAGTTCTGAAGGATTGTGAAGAGCACTGTTTGCATGAAGGCTCTGAAGTTAAAAGGCTTGGTGGCCTTCATGTAATTGGTACATCTTTACATGAGTCCCGGAGAATAGATAACCAGCTCCGTGGCAGAGCAGGAAGGCAGGGAGATCCAGGTTCAACACGATTTATGGTTAGCTTGCAGGACGAGATGTTTCAAAAGTTCAATTTTGATACGGAATGGGCTGTCAGACTTATATCAAAGATTACAAATGATGAGGATATGCCAATTGAGGGTGATGCCATTGTGAAGCAGCTCTTGGGGTTGCAAATCAATGCAGAGAAGTTCTTCTTCAGCATAAGAAAGAGCCTAGTTGAATTTGATGAAGTATTGGAGGTGCAGCGAAAGCATGTTTATGATCTAAGGCAGTTGATCTTGACTGGAGATGATGAAAGCTGTTCCCAACACATATTCCAGTACCTGCAAGCAGTTGTGGATGAGATTGTCTTCAGTAACATCAATCCAATGAAGCATCCATGTACCTGGAGTTTGAGTAAGCTCTTGAAAGAGTTTATGACAATTGGTGGAAAGCTGCTTCATGAATCTTTTGGAGGGATCACCGACGACTCTTTGTTAAACTCACTTGGGCAACTGAATGATGCGGGTTCCATTGATATTGTCAACTTTTCCCTTCCAAATCTGCCCACACCTCCAAATGCATTCAGGGGAATCCGCAGGAAAAGTTCTTCGTTGAGACGTTGGCTTGTTATTTGCTCTGATGATCTAATTGAGAACGGGAAGTATCGGACAACATCTAATCTCCTCCGGAAATATCTTGGAGATTTTCTAATTGCTTCATATCTAAATGTTGTTGAAGAGTCTGGTTATGAAGATAAATATGTCAAGGAAATTGAGAGAGCTGTTCTTTTGAAAACTCTTGATTGCTTCTGGAGAGATCACCTTGTAAACATGAATCGGCTCAGCTCTGCGGTGAATATAAGGAGCTTTGGGCACAGAAACCCTCTTGAAGAGTACAAAATTGACGGTTGCCGTTTTTTCATCTCAATGCTTAGTGCAACAAGGAGGTTAACTGTAGAAGCGCTGTTACAGCATTGGTCATCTCCAATGGAATCACTTGAACTATCTTGA 2946 0.4321 MSLNYWVVRDYYRLVSSVNSFEAHIQKLSDEQLTAKTEEFRRRLGRGETLGDIQAEAFAVVREAAWRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDSEWMGRVHCFLGLSVGLIQKGMNAAERRSNYRCDITYTNNSELGFDYLRDNLAGNREDLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLVQGTHYNVELKNESVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVEYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEREFLKMFQMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFRQGRPILVGTTSVENSELLAGLLWEWNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLAREIIEDSVIHLLTQQVPNVELASETVSRQVLPKIKVGSSSMALLAKATLMAKYVSKSEGRNWTYQKAKSLITEAIQFSLSYSFEELEELANEDSEFYPLGPTVALAYVSVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDMPIEGDAIVKQLLGLQINAEKFFFSIRKSLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIFQYLQAVVDEIVFSNINPMKHPCTWSLSKLLKEFMTIGGKLLHESFGGITDDSLLNSLGQLNDAGSIDIVNFSLPNLPTPPNAFRGIRRKSSSLRRWLVICSDDLIENGKYRTTSNLLRKYLGDFLIASYLNVVEESGYEDKYVKEIERAVLLKTLDCFWRDHLVNMNRLSSAVNIRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALLQHWSSPMESLELS* 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0663 981 Gene3D Helical scaffold and wing domains of SecA 700 805 - -
Amo08g0663 981 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 391 678 IPR027417 -
Amo08g0663 981 Gene3D Helical scaffold and wing domains of SecA 843 972 - -
Amo08g0663 981 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 4 979 - -
Amo08g0663 981 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 4 979 IPR000185 GO:0005524|GO:0006605|GO:0006886
Amo08g0663 981 Gene3D - 391 697 IPR027417 -
Amo08g0663 981 Pfam SecA Wing and Scaffold domain 695 969 IPR011116 GO:0016020|GO:0017038
Amo08g0663 981 ProSitePatterns SecA family signature. 476 491 IPR020937 GO:0006605|GO:0006886|GO:0016020
Amo08g0663 981 Pfam SecA DEAD-like domain 8 375 IPR011115 GO:0005524|GO:0016020|GO:0017038
Amo08g0663 981 SMART SecA_DEAD_2 1 376 IPR011115 GO:0005524|GO:0016020|GO:0017038
Amo08g0663 981 SUPERFAMILY Helical scaffold and wing domains of SecA 868 978 IPR036266 -
Amo08g0663 981 SUPERFAMILY Helical scaffold and wing domains of SecA 701 798 IPR036266 -
Amo08g0663 981 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 389 IPR027417 -
Amo08g0663 981 TIGRFAM secA: preprotein translocase, SecA subunit 18 790 IPR000185 GO:0005524|GO:0006605|GO:0006886
Amo08g0663 981 ProSiteProfiles SecA family profile. 1 697 IPR014018 -
Amo08g0663 981 Gene3D - 222 342 - -
Amo08g0663 981 Pfam SecA preprotein cross-linking domain 228 332 IPR011130 GO:0016020|GO:0017038
Amo08g0663 981 SUPERFAMILY Pre-protein crosslinking domain of SecA 220 341 IPR036670 GO:0016020|GO:0017038
Amo08g0663 981 PRINTS SecA protein signature 91 105 IPR000185 GO:0005524|GO:0006605|GO:0006886
Amo08g0663 981 PRINTS SecA protein signature 387 400 IPR000185 GO:0005524|GO:0006605|GO:0006886
Amo08g0663 981 PRINTS SecA protein signature 107 117 IPR000185 GO:0005524|GO:0006605|GO:0006886
Amo08g0663 981 PRINTS SecA protein signature 53 77 IPR000185 GO:0005524|GO:0006605|GO:0006886
Amo08g0663 981 PRINTS SecA protein signature 350 367 IPR000185 GO:0005524|GO:0006605|GO:0006886
Amo08g0663 981 PRINTS SecA protein signature 160 180 IPR000185 GO:0005524|GO:0006605|GO:0006886
Amo08g0663 981 PRINTS SecA protein signature 313 335 IPR000185 GO:0005524|GO:0006605|GO:0006886
Amo08g0663 981 CDD SF2_C_secA 394 665 IPR044722 -
Amo08g0663 981 Hamap Protein translocase subunit SecA [secA]. 2 973 IPR000185 GO:0005524|GO:0006605|GO:0006886
Amo08g0663 981 Gene3D - 12 389 IPR027417 -
Amo08g0663 981 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 79 242 IPR014001 -
Amo08g0663 981 SMART SecA_PP_bind_2 221 332 IPR011130 GO:0016020|GO:0017038
Amo08g0663 981 CDD DEXDc_SecA 32 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0663 Amo-Chr8 11773433 11781842 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0663 K03070 - gmx:100793437 1746.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0663 08 11773433 11781842 Amo17g2698 17 127389831 127396235 hybridization