Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2616 ATGGCCTTGGAGAACTGTTTAAGATTAAGTACCACAGTAGGAACAGCAAGAATTCAATGTCTTTCTCCATTGTCTTCAAGGAAGAAACTTGTTTTTTCATCTTACAGAGGATTTAACAAGTCCATGCTATATTCAACAGTATCAAATTCAAATCCATCTCTTTACTCAACTGCTGGTACCTCTAGAAAATCCTCTTTTGTTTGCAATGCTCGTGAAAAGGTAAATGAAGTGCAAGTAGTGACAGACTCAAGCTGGAACAAACTTGTGATAGGAAGTGAAACACCAGTGCTGGTTGAGTTTTGGGCACCATGGTGTGGTCCATGCAGGATGATAGCACCCATCATTGATGAGCTGGCAAAAGAATATGCTGGCAAGATAGCATGCTACAAGATTAACACCGATGACTGTCCCAACATAGCCACACAGTACGGCATCAGAAGCATTCCTACTGTTCTCTTCTTCAAGAATGGAGAGAAGAAAGAGAGCGTCATTGGTGCAGTCCCCAAGTCCACTTTGTCAGCAACACTTGATAAATATGTTGACATTTGA 549 0.4117 MALENCLRLSTTVGTARIQCLSPLSSRKKLVFSSYRGFNKSMLYSTVSNSNPSLYSTAGTSRKSSFVCNAREKVNEVQVVTDSSWNKLVIGSETPVLVEFWAPWCGPCRMIAPIIDELAKEYAGKIACYKINTDDCPNIATQYGIRSIPTVLFFKNGEKKESVIGAVPKSTLSATLDKYVDI* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2616 182 PANTHER GEO12009P1 25 179 - -
Amo17g2616 182 Pfam Thioredoxin 77 177 IPR013766 -
Amo17g2616 182 CDD TRX_family 89 177 - -
Amo17g2616 182 Gene3D Glutaredoxin 77 181 - -
Amo17g2616 182 PRINTS Thioredoxin family signature 96 104 - -
Amo17g2616 182 PRINTS Thioredoxin family signature 104 113 - -
Amo17g2616 182 PRINTS Thioredoxin family signature 144 155 - -
Amo17g2616 182 ProSiteProfiles Thioredoxin domain profile. 43 181 IPR013766 -
Amo17g2616 182 SUPERFAMILY Thioredoxin-like 64 181 IPR036249 -
Amo17g2616 182 TIGRFAM thioredoxin: thioredoxin 81 179 IPR005746 GO:0015035
Amo17g2616 182 ProSitePatterns Thioredoxin family active site. 97 115 IPR017937 -
Amo17g2616 182 PANTHER THIOREDOXIN M-TYPE PROTEIN 25 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2616 Amo-Chr17 125490523 125492434 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2616 K03671 - gmx:100500292 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2616 17 125490523 125492434 Amo17g2616 17 125490523 125492434 ECH
Amo10g1925 10 69801263 69804127 Amo17g2616 17 125490523 125492434 hybridization