Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2611 ATGACAGGTTGGAGGACATACCGCAGGCCGGATGATAAGTCCGGTGGACATGGTGTTGGATGGAGTCCTATTATACCATACGCTTTCCGAGTACCTGAGGAATGGGAAGAGGTACCAGTATCAATAGCAGATCTTGGTGGCACTGAGATAGATTTGAGATTTGCAAACTCTAAGCAAGGGCATCTGTTTGTCGTTGTTGCTCCTGTTCTTAGATTTGCTGATAATCTTGGTGATGATGCTACAATAGAAAAAATCGGACCTCCAGAGAAAGTCATCAATGCATTTGGTCCGGAAATGATTGGGGACAATGTCGAGGGAAAGGTTCTAAGTTCAGACGTAGCAGAACACAATGGAAGAACATACTACCAGTTTGAGCTAGAGCCTCCTCATATTTTTATTACTGCTACTGCAGCTGGAAATCGCTTGTACCTGTTTGGTGTAACAGGCAGTGGTATGTATATTTATTCTCTTCTAAGCAGTCTTGCATCATCAAGTCTGGACAGGCATAAAAAAAAAAAGAAAAAATGCTTGAAAATGTTAACAGAAAATAACAGAATGTTGTCCTCATTGCAGGTCTTCAGTGGAAGAGACACTACAATGATTTGA 606 0.4158 MTGWRTYRRPDDKSGGHGVGWSPIIPYAFRVPEEWEEVPVSIADLGGTEIDLRFANSKQGHLFVVVAPVLRFADNLGDDATIEKIGPPEKVINAFGPEMIGDNVEGKVLSSDVAEHNGRTYYQFELEPPHIFITATAAGNRLYLFGVTGSGMYIYSLLSSLASSSLDRHKKKKKKCLKMLTENNRMLSSLQVFSGRDTTMI* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2611 201 Gene3D Mog1/PsbP, alpha/beta/alpha sandwich 23 154 - -
Amo17g2611 201 PANTHER - 2 176 - -
Amo17g2611 201 SUPERFAMILY Mog1p/PsbP-like 19 149 IPR016123 -
Amo17g2611 201 Pfam PsbP 27 160 IPR002683 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Amo17g2611 201 PANTHER PSBP DOMAIN-CONTAINING PROTEIN 4, CHLOROPLASTIC 2 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2611 Amo-Chr17 125404690 125408461 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2611 - - adu:107460545 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2611 17 125404690 125408461 Amo17g2611 17 125404690 125408461 ECH
Amo08g0570 08 10452541 10454494 Amo17g2611 17 125404690 125408461 hybridization