Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2610 ATGCACATGAGTGTTATTCTGATGAATTGGATGAACAGGTTCTGTGTACTTGAGTATGTCGTTGGTCAGATAGGATTGGTTTTGCACGGAGATTTGTCAATTGTACGATGCTGTTTAGGTTTGATCAAACTTAGATGGATCTCTYTTACCAATTTCTTTGTTGATAATGGAAATGATATTCCTGAGGACAATGTCGGTAGGAGCAGACTTCATAGGCCTTTGCATGAGCAAGATGAAGATTTTGAAGCTTTAGAAAGACACATCCAGGAAAGATATGCAAGGCGTGTGGAATCTTTTGATGAAGAGGCTACAGATGTAGAKCAGCAAGCTCTTTTGCCATCTGTTAGAGATCCAAAGCTGTGGATGGTGAAATGRKSGATTGGTCYTGAGKGAGAGACAGCTGTTTGCCTTATGCAAAAGTATATAGATAAGGGGGCTGAATTGCAAATCAGGTCAGCTATTGCCCTTGATCATCTTAAAAACTATATTTATGTGGAAGCAGATAAAGAGGCCCACGTGAGAGAGGCTATTAAGGGTTTAAGGAACATATATGGGGCGTCAAAAATAACACTAGTTCCAATAAGAGAAATGACGGATGTGCTGTCAGTTGAAAGCAAAGCAATTGATCTTGCCAGAGATACTTGGGTCAGAATGAAGATTGGCACATATAAAGGGGACCTTGCCAAGGTAGTTGATGTTGATAATGTGAGGCAGAGGGTTACGGTGAAACTGATTCCAAGGATAGACTTGCAGGCGCTTGCAAATAAACTGGAAGGTAGAGAAGTTGTGAAAAAGAAGGCGTTTGTCCCTCCTCCTCGTTTTTTYAATGTTGATGAAGCTAGGGAACTGCATATTCGTGTCGAGCATAGACGTGATGCCTATGGGGAAAGATTTGATGCAATTGGAGGAATGATGTTTAAGGATGGATTCTTATACAAAACTGTATCAATAAAATCCATTAATGCTCAAAACATCAAACCTACTTTGAATGAACTTGAAAASTTTCGAAAACCTGGTGAGAGTGGTGACAGCGATGTAGCAAGTCTGTCAACTTTGTTCGCTAACAGAAAGAAAGGCCATTTTATGAAAGGTGATGCTGTAATRGTTGTGAAGGGTGATTTGAAMAAGTTGAAGGGGTGGGTGGAGAAAGTAGATGAAGATAATGTTCATATAAGACCAGAATTGAAGGGTCTTCCTAAAACCCTTGCTGTAAATGAAAGGGAACTTTGTAAATATTTTGAACCTGGAAACCACGTTAAGGTTGTTACTGGTGCTCAAGAGGGTGCTACCGGCATGGTTGTGAAGGTGGAACAGCATGTATTGATTCTATTATCCAACCAACAAAAGAACATTGACATGGAAATGTCCTCTCTTCAGATCCGTGTGTTTGCAGATGATMTTGTGGAGAGTTCTGAAGTGACCACTGGAATTACAAAAATTGGGGACTATGAACTTCGTGATCTTGTATTGTTAGATAATATGGACTTTGGTGTAATAATTCGTGTAGAAAGCGAGGCATTTCAGGTTCTTAAGGGGACTGCAGACAGGCCTGAAGTTGCACTTGTTAAATTAAGAGAGATTAAATGTAAGATAGAGAAGAAAATAAATGCGCAGGATAAGCATAAGAATACAGTCTCAGTAAAGGATGTTGTGCGAGTTGTRGAAGGTCCTTGCCATGGAAAATCTGGTCCTGTGGAGCACATATSTAGGGGGTTCTTGTTCATCTATGATCGCCATCATCTTGAACATGCAGGCTTTATATGTGCTAGGGCTGGCTCGTGTATGGTCGTTGGAGGTTCACGTTCGAGTGGTGACAGAAACGGTGATGCCTACTCGAGATTCCWTGGCCTTAGAACTCCACCTCGTATTCCCCAGTCCCCGAGAAGGTTTTCACGAGGAGGGCCTCCAATTGATTCTGGAGGAAGGCACAGGGGTGGAAWAGGACACGATGGTTTGGCTGGTGCAACAGTCAAAGTACGCCAGGGTGCTTATAAAGGTTATCGTGGACGTGTAATAGAAGTTAAAGGCACAACAGTTCGGGTTGAATTGGAGTCCCAAATGAAGGTTGTGACGGTTGATCGCAACCATATATCGGATAATGTAGCTGTAACCCCACAGCGTGAAACTCGATATTCGATTGGATGTGAAACCCCAATGCATCCTTCTCGAACTCCCCTACATCCATATATGACCCCTATGAGAGATCCTGGAGCAACTCCTATACATGATGGAATGAGGACACCAAGGCGTGACCGGGCATGGAATCCTTATACCCCAATGAGTCCYACAAGGGACTGGGAAGATGGAAATCCAGGCTCATGGGGAACCAGCCCACAGTCCCAGGCAGGAAGCTCACCTTCACGGCTATATGAAMCCCCCACTCCTGGTGCTGGTTGGGGTAGCACTCCTGGCGGAAACTATAATGAGGCTGGAACACCGCATGACTCATATGTAAATGTTGCGAGCCCATATTTACCATCAACACCTGGTGGGCAGCCTATGACGCCAAATTCCGCGGTGTATCTTCCCAGTACCCCTGGAGGACCACCCATGACTCCAGGAACTGGTGGTCTGGACATGATGTCCCCAGTTTTAGGTGGGGACAATGAGGGGCCATGGTTTATGCCAGACATATTAGTTAATGTACACAGGCCAGGTGAAGAATCTGTTGGAGTTATAAGAGAGGTTCTTCCGGATGGGTCTTGCAAGGTAGCGCTTGGCTCAAGTGGAAATGGTGAAACGATAACTGCCCTTCCCAATGAAATGGAGGCCGTGGTGCCAAGGAAATCAGACAAAATAAAGATAATGGGTGGAGCATTGAGGGGGTCTACAGGCAAGTTGATTGGTGTAGATGGTACTGATGGTATTGTAAAGGTAGATGACACATTGGAAGTCAAGATTTTAGACCTAGTTATTTTGGCCAAATTAGCTCAACCATGA 2940 0.4367 MHMSVILMNWMNRFCVLEYVVGQIGLVLHGDLSIVRCCLGLIKLRWISXTNFFVDNGNDIPEDNVGRSRLHRPLHEQDEDFEALERHIQERYARRVESFDEEATDVXQQALLPSVRDPKLWMVKXXIGXEXETAVCLMQKYIDKGAELQIRSAIALDHLKNYIYVEADKEAHVREAIKGLRNIYGASKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFFNVDEARELHIRVEHRRDAYGERFDAIGGMMFKDGFLYKTVSIKSINAQNIKPTLNELEXFRKPGESGDSDVASLSTLFANRKKGHFMKGDAVXVVKGDLXKLKGWVEKVDEDNVHIRPELKGLPKTLAVNERELCKYFEPGNHVKVVTGAQEGATGMVVKVEQHVLILLSNQQKNIDMEMSSLQIRVFADDXVESSEVTTGITKIGDYELRDLVLLDNMDFGVIIRVESEAFQVLKGTADRPEVALVKLREIKCKIEKKINAQDKHKNTVSVKDVVRVVEGPCHGKSGPVEHIXRGFLFIYDRHHLEHAGFICARAGSCMVVGGSRSSGDRNGDAYSRFXGLRTPPRIPQSPRRFSRGGPPIDSGGRHRGGXGHDGLAGATVKVRQGAYKGYRGRVIEVKGTTVRVELESQMKVVTVDRNHISDNVAVTPQRETRYSIGCETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPRRDRAWNPYTPMSPTRDWEDGNPGSWGTSPQSQAGSSPSRLYEXPTPGAGWGSTPGGNYNEAGTPHDSYVNVASPYLPSTPGGQPMTPNSAVYLPSTPGGPPMTPGTGGLDMMSPVLGGDNEGPWFMPDILVNVHRPGEESVGVIREVLPDGSCKVALGSSGNGETITALPNEMEAVVPRKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLEVKILDLVILAKLAQP* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2610 979 Gene3D - 637 700 IPR014722 -
Amo17g2610 979 CDD KOW_Spt5_4 555 590 IPR041977 -
Amo17g2610 979 CDD KOW_Spt5_3 412 470 IPR041976 -
Amo17g2610 979 CDD NGN_Euk 119 202 IPR039385 -
Amo17g2610 979 Gene3D - 413 466 IPR014722 -
Amo17g2610 979 SMART nusgn_4 117 204 IPR006645 GO:0140673
Amo17g2610 979 MobiDBLite consensus disorder prediction 770 788 - -
Amo17g2610 979 SUPERFAMILY Translation proteins SH3-like domain 404 450 IPR008991 -
Amo17g2610 979 MobiDBLite consensus disorder prediction 805 842 - -
Amo17g2610 979 Pfam KOW motif 415 440 IPR005824 -
Amo17g2610 979 CDD KOW_Spt5_2 361 411 IPR041975 -
Amo17g2610 979 Gene3D - 209 251 IPR014722 -
Amo17g2610 979 PANTHER SUPPRESSOR OF TY 5 55 977 IPR039659 GO:0006357|GO:0032784
Amo17g2610 979 CDD KOW_Spt5_1 213 250 IPR041973 -
Amo17g2610 979 Gene3D - 99 202 IPR036735 GO:0006355
Amo17g2610 979 Gene3D - 355 412 IPR014722 -
Amo17g2610 979 MobiDBLite consensus disorder prediction 607 654 - -
Amo17g2610 979 PIRSF Spt5 49 979 IPR017071 GO:0006357|GO:0032784
Amo17g2610 979 SMART kow_9 209 236 IPR005824 -
Amo17g2610 979 SMART kow_9 360 387 IPR005824 -
Amo17g2610 979 SMART kow_9 650 677 IPR005824 -
Amo17g2610 979 SMART kow_9 926 953 IPR005824 -
Amo17g2610 979 SMART kow_9 412 439 IPR005824 -
Amo17g2610 979 SMART kow_9 544 571 IPR005824 -
Amo17g2610 979 CDD KOW_Spt5_5 652 698 IPR041978 -
Amo17g2610 979 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 55 977 - -
Amo17g2610 979 Pfam Early transcription elongation factor of RNA pol II, NGN section 119 201 IPR005100 -
Amo17g2610 979 MobiDBLite consensus disorder prediction 713 864 - -
Amo17g2610 979 CDD KOW_Spt5_6 920 977 IPR041980 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2610 Amo-Chr17 125395521 125402748 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2610 K15172 - gmx:100784916 1524.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2610 17 125395521 125402748 Amo17g2610 17 125395521 125402748 ECH
Amo08g0577 08 10521750 10522694 Amo17g2610 17 125395521 125402748 hybridization