Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2572 ATGGCAACTTTTGAGTTAGAGAAGCTGCCTCTTACATATACTCATTCACTTTCAGATTCTTCCTCTGCCTATCAACCTTTCCCTTCTCATTCTCACTACCAAAAATATTATCACTACAATCTTGTTATCACTGATAAGGACCAATTCCGTAATTTCCTTCTTGTTTCATTAACAATCATTCTTGCCATCATAGCATTGGTTCTAATCCTGCACTTTTTACCCCATAAGAACAAGCATCAAGGAACTTCAATCAATTTCAAACTCGCAATTAACCATGCTCTAACTTTTTATGATGCACAAAAATCTGGACACTATCCGAAGAACAGCCCAGTGAAATTTCGAGGCGATTCAGGATTAGGCGATGGAAAATCAGCAGATACTGATCTTGTTGGTGGATTCTATGACTCTGGCAATAACATTAAATTTACTTTCACCACAGCTTATACTACAACCTTGTTGAGTTGGAGTGTGATGGAATATCATAGTAAATATGCTGATCTTGGTGAGCTTCAACATGTTAGAGACATAATCAGATGGGGAAGTGACTATCTCCTTAAGGTGTTCATTCTCCCAACTTCAACATCTAAATCCAACCTTACAATATACTCTCAGGTTGGAAATACCATTAGTGATAAGGGAGAGCCAAAAAATGATATAAGCTGCTGGCAAAGACCTGAAGACATGGATTATGCAAGACCAGTTTCAATTTGTGACAGTTCTGCTTCAGATTTAGGAGGTGAAATTGTTGCAGCATTATCTGCATCATCTATGGTATTAAAAAATGACACAGAATACTCAAAGAAACTAGTCAAAGCAGCAGAAACTCTACACAAGTTAGTCACAAGTGAAGATCCAAAGAAGCAAGGAACTTACACAATGGTTGATGCATGTGGAAAACAAGCAAGAGATTTCTACAAATCATCAAGTTACAAAGATGAATTGGCATGGGGAGGAACATGGTTGTTTCTTGCTACTGGAAACTTAACTTATCTTGATTATGCTACTGAGACTTTTAAATCTGCCAAGAGCAATGAATCAGATTTTGATAATGGAGCCTTTGATTGGAACAACAAGCTCAATGCAGTCGCGGTTTTGCTAACAAGAATTCGATACTTTCGTGATCCCGGAGGATTGTATGAACATGCTTTGAGGCTCTCATCAAACTCAACACACTCCCTCATGTGCTCTTTGCTGTTCAATGATTTTAGCAGGACACCTGGTGGATTGATTATCATGAAAGATGATAATGGGCCATTACTAGAGTATGCTGCAACAGCATCATTCCTCAGTAAATTGTATAGTGATTATCTTCATCATCTCAAGTTCTCTGGTGCAAAATGCAAGAGTAATGTTAACTACATATTGGGACAGAATCCTTTGAAGATGAGTTACTTAGTGGGACATGGTGACAAATTTCCAGTGCAAGTTCATCACAGAAGTGCATCAATTCCATGGGATGATAAGAAGCATTATAGTTGTGATGGTGGCAAGAAATGGCTCAACTCGAAGGATCCGAATCTGCAAGTTCTTGTTGGAGCCATGGTGGGAGGGCCAGACATGCATGATGGTTTCATAGATCAAAGGAACAATTCAAGGTTCACTGAGCCAAACATAGCAAGCAATGCTGGTTTAGTTGCAGCACTTATTGCACTTTCTGATAACTCAAGTGGCTTGAAAGATTCATTTTGA 1689 0.3866 MATFELEKLPLTYTHSLSDSSSAYQPFPSHSHYQKYYHYNLVITDKDQFRNFLLVSLTIILAIIALVLILHFLPHKNKHQGTSINFKLAINHALTFYDAQKSGHYPKNSPVKFRGDSGLGDGKSADTDLVGGFYDSGNNIKFTFTTAYTTTLLSWSVMEYHSKYADLGELQHVRDIIRWGSDYLLKVFILPTSTSKSNLTIYSQVGNTISDKGEPKNDISCWQRPEDMDYARPVSICDSSASDLGGEIVAALSASSMVLKNDTEYSKKLVKAAETLHKLVTSEDPKKQGTYTMVDACGKQARDFYKSSSYKDELAWGGTWLFLATGNLTYLDYATETFKSAKSNESDFDNGAFDWNNKLNAVAVLLTRIRYFRDPGGLYEHALRLSSNSTHSLMCSLLFNDFSRTPGGLIIMKDDNGPLLEYAATASFLSKLYSDYLHHLKFSGAKCKSNVNYILGQNPLKMSYLVGHGDKFPVQVHHRSASIPWDDKKHYSCDGGKKWLNSKDPNLQVLVGAMVGGPDMHDGFIDQRNNSRFTEPNIASNAGLVAALIALSDNSSGLKDSF* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2572 562 PANTHER ENDO-1,4-BETA-GLUCANASE 26 557 - -
Amo17g2572 562 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 453 479 IPR018221 -
Amo17g2572 562 Pfam Glycosyl hydrolase family 9 88 548 IPR001701 GO:0004553|GO:0005975
Amo17g2572 562 Gene3D - 82 555 IPR012341 GO:0005975
Amo17g2572 562 SUPERFAMILY Six-hairpin glycosidases 84 553 IPR008928 GO:0005975
Amo17g2572 562 PANTHER ENDOGLUCANASE 26 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2572 Amo-Chr17 124577495 124579957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2572 14 552 Glycoside Hydrolase AT5G49720 43.085 1.46e-133 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2572 K01179 - gmx:100805472 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0588 08 10729357 10731815 Amo17g2572 17 124577495 124579957 hybridization