Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0588 ATGGCAACTTTTGAGTTAGAGAAGCTGCCTCTTACATATACTCATTCACTTTCAGATTCTTCCTCTGCCTATCAACCTTTCCCTTCTCATTCTCACTACCAAAAATATTATCACTACAATCTTGTTATCACTGATAAGGACCAATTCCCTGGACACTATCCGAAGAACAGCCCAGTGAAATTTCGAGGCGATTCAGGATTAGGCGATGGAAAATCAGCAGATACTGATCTTGTTGGTGGATTCTATGACTCTGGCAATAACATTAAATTTACTTTCACCACAGCTTATACTACAACCTTGTTGAGTTGGAGTGTGATGGAATATCATAGTAAATATGCTGATCTTGGTGAGCTGCAACATGTTAGGGACATAATCAGATGGGGAAGTGACTATCTCCTAAAGGTGTTCATTCTCCCAACTTCATCTAAATCTAACCTTACAATATACTCGCAGGTTGGAAATACCATTAGTGATAAGGGAGAGCCAAAAAATGATATAAGCTGCTGGCAAAGACCTGAAGACATGGATTATGCAAGACCAGTTTCAATTTGTGACAGTTCTGCTTCAGATTTAGGAGGTGAAATTGTTGCAGCATTATCTGCATCATCTATGGTATTAAAAAATGACACAGAATACTCAATGAAACTAGTCAAAGCAGCAGAAACTCTACACAAGTTAGTCACAAGTGAAGATCCAAAGAAGCAAGGAACTTACACAATGGTTGATGCATGTGGAAAACAAGCAAGAGATTTCTACAAATCATCAAGTTACAAAGATGAATTGGCATGGGGAGGAACATGGTTGTTTCTTGCTACTGGAAACTTAACTTACCTTGATTATGCTACTGAGACTTTTAAATCTGCCAAGAACAATGAATCAGATTTTGATAATGGAACCTTTGATTGGAACAACAAGCTCAATGCGCTCGCGGTTTTGCTAACAAGAATTCGATATTTTCGTGATCCTGGAGGATTGTATGAACATGCTTTGAGGCTCTCATCAAACTCAACACACTCCCTCATGTGCTCTTTGCTGTTCAATGATTTTAGCAGGACACCTGGTGGATTGATTATCATGAAAGATGATAATGGGCCATTACTAGAGTATGCTGCAACAGCATCATTCCTCAGTAAATTGTATAGTGATTATCTTCATCATCTCAAGTTCTCTGGTGCAAAATGCAAGAGTAATGTGTTTTCGGTTAACTACATATTGGGACAGAATCCTTTGAAGATGAGTTACTTAGTGGGAYATGGTGACAAATTTCCAGTGCASGTTCATCACAGAAGTGCATCAATTCCATGGGATGATAAGAAGCATTATAGTTGTGATGGTGGCAAGAAATGGCTCAACTCGAAGGATCCGAATCTGCAAGTTCTTGTTGGAGCCATGGTGGGAGGGCCAGACATGCATGATGGTTTCATAGATCAAAGGAACAATTCAAGGTTCACTGAGCCAAACATAGCAAGCAATGCTGGTTTAGTTGCAGCACTTATTGCACTTTCTGATAACTCAAGTGGCTTGAAAGATTCATTTTGA 1539 0.3918 MATFELEKLPLTYTHSLSDSSSAYQPFPSHSHYQKYYHYNLVITDKDQFPGHYPKNSPVKFRGDSGLGDGKSADTDLVGGFYDSGNNIKFTFTTAYTTTLLSWSVMEYHSKYADLGELQHVRDIIRWGSDYLLKVFILPTSSKSNLTIYSQVGNTISDKGEPKNDISCWQRPEDMDYARPVSICDSSASDLGGEIVAALSASSMVLKNDTEYSMKLVKAAETLHKLVTSEDPKKQGTYTMVDACGKQARDFYKSSSYKDELAWGGTWLFLATGNLTYLDYATETFKSAKNNESDFDNGTFDWNNKLNALAVLLTRIRYFRDPGGLYEHALRLSSNSTHSLMCSLLFNDFSRTPGGLIIMKDDNGPLLEYAATASFLSKLYSDYLHHLKFSGAKCKSNVFSVNYILGQNPLKMSYLVGXGDKFPVXVHHRSASIPWDDKKHYSCDGGKKWLNSKDPNLQVLVGAMVGGPDMHDGFIDQRNNSRFTEPNIASNAGLVAALIALSDNSSGLKDSF* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0588 512 Pfam Glycosyl hydrolase family 9 51 498 IPR001701 GO:0004553|GO:0005975
Amo08g0588 512 SUPERFAMILY Six-hairpin glycosidases 24 503 IPR008928 GO:0005975
Amo08g0588 512 PANTHER ENDO-1,4-BETA-GLUCANASE 48 507 - -
Amo08g0588 512 PANTHER ENDOGLUCANASE 48 507 - -
Amo08g0588 512 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 403 429 IPR018221 -
Amo08g0588 512 Gene3D - 37 505 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0588 Amo-Chr8 10729357 10731815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0588 48 502 Glycoside Hydrolase AT5G49720 46.639 6.22e-121 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0588 K01179 - gmx:100805472 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0588 08 10729357 10731815 Amo17g2572 17 124577495 124579957 hybridization