Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2550 ATGGGAGTTGTGACTGTTTCTAGCTCAGCTGCCAGGACACCACTAGGATTAAATACAAAGTTTAGCACTCATGGATCTGCCCTAAAGAGGCCTTTAGTCATAGCATTTAAAGGAGATAAGCACAATGATTCGGCACTGATTGCAACCAAAGAGAAAGTTCCTATCCACGTTGAAATGGAGAAAAGTAATAATAAGAAACGGATGGGAAAGATTAACAAATCGCCTAAGCGAGGGAGAACTATCTCCATAGAGGAATCTGCTATGTTGGACGTGGACTACAATGAGGCTGCTGCCATACTTGAAAACATATACAAACTTAGCTCTGCATCCGAAACTCACAATGCAGTATATATAGATACTAAGACCAAGAGAGTGTTGCGTCGGGAGAAGAAGATTGCTGATAAAGAAGGAGAGGTAAACAATAATGATAGGACCAGAGTGATTAGAAATAGAAACACCAAGACAAAACGATTAAGTCTTGATAAGAGGATTGCTTTGAAAAACAACATTCCCACTCCAAAGAAAAGAATTGTTAAGGATAACAGTGAGAAGATTGAGGAACTTGTTAGGGAATATTCAGGGTCGACGGATCTTGTTAGTTTGGACTGGAAGAAAATGAAAATACCTCCAGTTCTTCCTTCTTCAGAGCATACTTGGTTGTTCAAGTTGATGCAACCTATGAAGGCACTTCTTCAAGTGAAAGAGGATTTGCAGAAGGAGCTAGGTAGAGAACCTACAGAGGCTGAACTAGCTGACGCTACAAATATGAACGTTTCTCAAGTAAAGAAAACTATAGAAGTAGGCCGAGCTGCAAGAAACAAGCTGATCAAGCACAACCTCCGGCTTGTGTTATTTGTGATCAACAAATATTTTTGGGATTTTGGCAATAGCCCACGGTTTCAGGATCTGTGTCAGGCAGGAGTTAAAGGACTCATTACAGCAATTGATCGCTTCGAGCCGAACAGAAGATTCCGGCTATCCACCTACGGATTGTTTTGGATAAGACATTCCATCATTCGTTCAATGACCCTCTCAAGTTTTACACGTGTTCCCTTTGGACTTGAATCAGTTAGGGCAGAGATTCAAAGAGCTAAACTGGAGTTGACGTTTGAGCTTCAGAGGCAGCCAACAGATGAAGAAATAATGGAGAGAGCTCAAATTTCCCCAGAACGATACCATGATGTAATGAAGGCATCAAAATCCATTCTTTCCCTAAACGCGCGGCATTCAACCACACAAGAGGAGTTTATAAATGGGATTACTGATGATGATGGTGTCAACGGTGATAATAGAAGGCAACATGCTCTACTAAGGCTTGCTCTTGATGATGTGCTTGATTCCCTGAAGCCAAAGGAGAGCTTGGTGATAAGACAGAGATTTGGACTGGATGGCAAGGGAGATAGAACATTGGGGGAAATAGCTGGGAACTTGAACATTTCTAGGGAAATGGTAAGAAAGCATGAAGTCAAGGCTCTCATGAAGCTCAAGCACCCAGCTCGATTGGATTATCTTCGTCGTTACGTTGTATAA 1530 0.417 MGVVTVSSSAARTPLGLNTKFSTHGSALKRPLVIAFKGDKHNDSALIATKEKVPIHVEMEKSNNKKRMGKINKSPKRGRTISIEESAMLDVDYNEAAAILENIYKLSSASETHNAVYIDTKTKRVLRREKKIADKEGEVNNNDRTRVIRNRNTKTKRLSLDKRIALKNNIPTPKKRIVKDNSEKIEELVREYSGSTDLVSLDWKKMKIPPVLPSSEHTWLFKLMQPMKALLQVKEDLQKELGREPTEAELADATNMNVSQVKKTIEVGRAARNKLIKHNLRLVLFVINKYFWDFGNSPRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYGLFWIRHSIIRSMTLSSFTRVPFGLESVRAEIQRAKLELTFELQRQPTDEEIMERAQISPERYHDVMKASKSILSLNARHSTTQEEFINGITDDDGVNGDNRRQHALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARLDYLRRYVV* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2550 509 Pfam Sigma-70, region 4 444 497 IPR007630 GO:0003700|GO:0006352|GO:0006355
Amo17g2550 509 Coils Coil 354 374 - -
Amo17g2550 509 Gene3D - 348 400 IPR036388 -
Amo17g2550 509 Gene3D - 222 264 IPR036388 -
Amo17g2550 509 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 271 497 IPR014284 GO:0003700|GO:0006352|GO:0006355
Amo17g2550 509 Pfam Sigma-70 region 2 275 341 IPR007627 GO:0003700|GO:0006352|GO:0006355
Amo17g2550 509 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 509 - -
Amo17g2550 509 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 414 504 IPR013324 -
Amo17g2550 509 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 509 - -
Amo17g2550 509 Pfam Sigma-70 region 3 360 427 IPR007624 GO:0003700|GO:0006352|GO:0006355
Amo17g2550 509 Pfam Sigma-70 region 3 230 270 IPR007624 GO:0003700|GO:0006352|GO:0006355
Amo17g2550 509 PRINTS Major sigma-70 factor signature 302 315 IPR000943 GO:0003700|GO:0006352|GO:0006355
Amo17g2550 509 PRINTS Major sigma-70 factor signature 326 334 IPR000943 GO:0003700|GO:0006352|GO:0006355
Amo17g2550 509 PRINTS Major sigma-70 factor signature 448 460 IPR000943 GO:0003700|GO:0006352|GO:0006355
Amo17g2550 509 PRINTS Major sigma-70 factor signature 469 484 IPR000943 GO:0003700|GO:0006352|GO:0006355
Amo17g2550 509 PRINTS Major sigma-70 factor signature 484 495 IPR000943 GO:0003700|GO:0006352|GO:0006355
Amo17g2550 509 Gene3D - 431 509 IPR036388 -
Amo17g2550 509 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 350 419 IPR013324 -
Amo17g2550 509 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 194 342 IPR013325 GO:0003700|GO:0006352|GO:0006355
Amo17g2550 509 Gene3D - 265 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2550 Amo-Chr17 124070610 124075724 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2550 K03093 - gmx:100776369 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2550 17 124070610 124075724 Amo17g2550 17 124070610 124075724 ECH
Amo08g0517 08 9488162 9493585 Amo17g2550 17 124070610 124075724 hybridization