Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0517 ATGGGAGTTGTGACTGTTTCTAGCTCAGCTGCCAGGACACCACTAGGATTAAATACAAAGTTTAGCACTCATGGATCTACCCTGAAGAGGCCTTTAATCGTAGCATTTAAAGGAGATAAGCACAATGATTCGGCACTGATTGCGACGAAAGAGAAAGTTCCTATCCACATTGAAATGGAGAAAAGTAATAATAAGAAACGGATGGGAAAGACTAACAAATCACCCAAGCGAGGGAGAACTATCTCTACAGAGGAATCTGCGCTGTTGGATGTCGACTACAACGAGGCTGCTGCCATACTTGAAAACATATACAAACTTAGCTCTGCATCCGAAACTCACAATGCAGAATATGTAGATACTAAGACCAAGAGAGTGTTGCGTCGGGGGAAGAAGATTGCTGATAAAGAAGGGGAGTTAAACAATAATGATAGGACCAGGGTGATTAGAAATAGAAATTCCAAGGCAAAACGACTAAGTCTTGATAAGAGGATTGCTTTGAAAAACAACATTCCCACTCTAAAGAAAAGAACTGTTAAGGATAACAGTGAGAAGATTGAGGAACTTGTTAGGGAATATTCAGCATCTACAGATCTTGTTAGTTTGGACTGGAAGAAAATGAAAATACCTCCGGTTCTTCCTTCTTCAGAGCATACTTGGTTGTTCAAGTTGATGCAACCTATGAAGGCACTTTTTCAAGTGAAAGAGGATTTACAGAAGGAGCTAGGTAGAGAACCTACAGAGGCTGAATTAGCTGACGCAACAAATATGAACGTTTCTCAAGTGAAGAAAACTATAGAGGTCGGCCGAGCTGCAAGAAACAAGCTCATCAAGCACAACCTCCGGCTTGTGTTATTTGTGATCAACAAATATTTTTCGGATTTTGGCAATAGCCCACGGTTTCAAGATCTGTGTCAGGCAGGAGTTAAAGGTCTCATTACATCAATTGATCGTTTCGAGCCGAACAGAAGATTCCGGCTATCCACCTATGGATTGTTTTGGATAAGACATTCCATCATTCGTTCAATGACCCTTTCAAGCTTCACACGTGTTCCCTTTGGACTTGAATCAGTTAGGGCAGATATCCAAAGAGCTAAACTGGAGTTGACGTTTGAGCTTCAGAGGCAGCCAACAGATGAAGAAATAATGGAGAGAGCTCAAATCTCCCCAGAACGATACTATGATGTAATGAAGGCATCAAAATCCATTCTTTCCTTAAATGCGCGGCATTCAACCACACAAGAAGAGTTTATAAATGGTATTACTGACGATGATGGTGTCAACGGTGATAATAGAAGGCAACATGCTCTACTAAGGCTTGCTCTTGACGATGTGCTTGATTCCCTGAAGCCAAAGGAGAGCTTGGTGATAAGACAAAGATTTGGACTGGATGGTAAGGGAGATAGAACATTGGGGGAAATAGCTGGGAACTTGAACATTTCTAGGGAAATGGTAAGAAAGCATGAAGTCAAGGCTCTCATGAAGCTCAAGCACCCAGCTCGATTGGATTATCTTCGTCGTTATGTTGTATAA 1530 0.415 MGVVTVSSSAARTPLGLNTKFSTHGSTLKRPLIVAFKGDKHNDSALIATKEKVPIHIEMEKSNNKKRMGKTNKSPKRGRTISTEESALLDVDYNEAAAILENIYKLSSASETHNAEYVDTKTKRVLRRGKKIADKEGELNNNDRTRVIRNRNSKAKRLSLDKRIALKNNIPTLKKRTVKDNSEKIEELVREYSASTDLVSLDWKKMKIPPVLPSSEHTWLFKLMQPMKALFQVKEDLQKELGREPTEAELADATNMNVSQVKKTIEVGRAARNKLIKHNLRLVLFVINKYFSDFGNSPRFQDLCQAGVKGLITSIDRFEPNRRFRLSTYGLFWIRHSIIRSMTLSSFTRVPFGLESVRADIQRAKLELTFELQRQPTDEEIMERAQISPERYYDVMKASKSILSLNARHSTTQEEFINGITDDDGVNGDNRRQHALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARLDYLRRYVV* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0517 509 Gene3D - 222 264 IPR036388 -
Amo08g0517 509 Gene3D - 348 400 IPR036388 -
Amo08g0517 509 Pfam Sigma-70, region 4 444 497 IPR007630 GO:0003700|GO:0006352|GO:0006355
Amo08g0517 509 Pfam Sigma-70 region 3 360 427 IPR007624 GO:0003700|GO:0006352|GO:0006355
Amo08g0517 509 Pfam Sigma-70 region 3 232 270 IPR007624 GO:0003700|GO:0006352|GO:0006355
Amo08g0517 509 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 509 - -
Amo08g0517 509 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 271 497 IPR014284 GO:0003700|GO:0006352|GO:0006355
Amo08g0517 509 PRINTS Major sigma-70 factor signature 302 315 IPR000943 GO:0003700|GO:0006352|GO:0006355
Amo08g0517 509 PRINTS Major sigma-70 factor signature 469 484 IPR000943 GO:0003700|GO:0006352|GO:0006355
Amo08g0517 509 PRINTS Major sigma-70 factor signature 326 334 IPR000943 GO:0003700|GO:0006352|GO:0006355
Amo08g0517 509 PRINTS Major sigma-70 factor signature 448 460 IPR000943 GO:0003700|GO:0006352|GO:0006355
Amo08g0517 509 PRINTS Major sigma-70 factor signature 484 495 IPR000943 GO:0003700|GO:0006352|GO:0006355
Amo08g0517 509 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 509 - -
Amo08g0517 509 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 414 504 IPR013324 -
Amo08g0517 509 Pfam Sigma-70 region 2 275 341 IPR007627 GO:0003700|GO:0006352|GO:0006355
Amo08g0517 509 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 350 419 IPR013324 -
Amo08g0517 509 Gene3D - 265 343 - -
Amo08g0517 509 Gene3D - 431 509 IPR036388 -
Amo08g0517 509 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 193 342 IPR013325 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0517 Amo-Chr8 9488162 9493585 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0517 K03093 - gmx:100776369 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0517 08 9488162 9493585 Amo17g2550 17 124070610 124075724 hybridization