Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2542 GTTCTAAGCAGTGTAACAAAAATCTTTACTTCTTTTTTGTATAACAAAGCTTCATTCATTTCATTTCTTTGTTATCTCTCTGATCTCACACAAACAATCAAGAAGAAATTAAACAAAAACATGTCAGAAACTCTTCGTATGATTGTTGCTGTTGTTGGAAATGCTGCTTCCGTAGCACTTTATGCTGCACCAACTGTAACCTTCAAGAGGGTGATAAGAAAGAAGAGCACTGAGGATTTCTCATGCATTCCATACATCATAGGACTCTTGAATTGTCTCTTGTTCACATGGTATGGATTGCCAATTGTGAGTTACAAGTGGGAAAATTTCCCTCTTGTTACTGTTAATGGAGTTGGGATTGTTCTTGAGTTCTCCTATGTTGTCATCTATTTCTGGTTTGCTTCTTCTAAGGGAAAGGTGAAGGTGGCAATGGTGACAATACCAGTTCTTATACTGTTCTGCATAGCTGCTGCAGTTTCAGCTTTTGCATTTCATGACACTCATAAAAGAAAGTTGCTTATTGGAAGCATAGGTTTAGGTGTTTCTGTTGCCATGTATGCTTCTCCTCTTGTTGCCATGAAACAAGTCATAAAAACCAAGAGTGTGGAGTTTATGCCTCTACCATTATCTTTGTGCTCTTTCTTGGCTGGTTCACTATGGCTGACTTATGGAGTCATGATTCGCGATGTATTTGTGGCGGGACCAAGTGTGGTTGGAGTGCCATTGGCCATACTCCAATTAGTTCTCCACTGCAAATACCGGAAAAGGAGMGTTTTGGAGGTACCAAACAAGGAGGGAATGGAAGAAAATGGTAACTTTGAGAAAGTGGATTTGGAAAAGGGAAGCTTGGAAATGAATGAAGTGGAAATCAATGTGACAAATCAAAAGAACAATGGAGACAACTTGTGA 909 0.3916 VLSSVTKIFTSFLYNKASFISFLCYLSDLTQTIKKKLNKNMSETLRMIVAVVGNAASVALYAAPTVTFKRVIRKKSTEDFSCIPYIIGLLNCLLFTWYGLPIVSYKWENFPLVTVNGVGIVLEFSYVVIYFWFASSKGKVKVAMVTIPVLILFCIAAAVSAFAFHDTHKRKLLIGSIGLGVSVAMYASPLVAMKQVIKTKSVEFMPLPLSLCSFLAGSLWLTYGVMIRDVFVAGPSVVGVPLAILQLVLHCKYRKRXVLEVPNKEGMEENGNFEKVDLEKGSLEMNEVEINVTNQKNNGDNL* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2542 302 Pfam Sugar efflux transporter for intercellular exchange 173 256 IPR004316 GO:0016021
Amo17g2542 302 Pfam Sugar efflux transporter for intercellular exchange 49 137 IPR004316 GO:0016021
Amo17g2542 302 Gene3D - 48 147 - -
Amo17g2542 302 PANTHER RAG1-ACTIVATING PROTEIN 1 44 297 - -
Amo17g2542 302 Gene3D - 172 260 - -
Amo17g2542 302 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 44 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2542 Amo-Chr17 123952022 123953720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2542 41 300 Miscellaneous Gene Families AT5G53190 50.000 6.29e-91 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2542 K15382 - gmx:100813119 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2542 17 123952022 123953720 Amo17g2542 17 123952022 123953720 ECH
Amo08g0512 08 9428250 9429884 Amo17g2542 17 123952022 123953720 hybridization