Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2494 ATGGGATGCAAGTATTCAAAGAAAGTCATAAATAAAGTACCGGGTTACGAGGAACCCATTGTTCTTGCTTCTCAGACACCTTTTAATGTGAGTGAAGTTGAGGCCTTATATGAGCTTTACAAGAAGTTGAGCAATTCAATTATTGCAGATGGTCTTATTCACAGGGAAGAATTCCAACTTGCACTCTTCAGGAATAAAAACAAGAGAAATCTGTTTGCAGACAGGATTTTTGATCTATTTGATATCAAGAAAAATGGGGTCATTGAGTTTGGAGAATTTGTTCGATCATTGGGTGTATTTCACCCAGATGCATCTATGGAAGACAAGATCAAATTTGCTTTTAGGTTATATGATCTAAGGCAGACAGGGTATATTGAACGTGAAGAGTTGAAGGAGATGGTGTTGGCACTTCTACACGAGTCTGATCTTGTGCTTTCAGATGATATCGTGGAATCCATCGTGGATAAGACTTTTAGTGATGCTGATACAAAAGGTGATGGAAGGATTGATCAGGATGAGTGGAAAGCATTTGTGTCTAAGCATCCATCCTTGATAAAGAACATGACTCTACCATATCTAAAGGATATAACCTTAGCATTTCCCAGTTTTGTTGTAAATTCAGATGTTGATGATGCAGATGTATGTGTATGA 651 0.3763 MGCKYSKKVINKVPGYEEPIVLASQTPFNVSEVEALYELYKKLSNSIIADGLIHREEFQLALFRNKNKRNLFADRIFDLFDIKKNGVIEFGEFVRSLGVFHPDASMEDKIKFAFRLYDLRQTGYIEREELKEMVLALLHESDLVLSDDIVESIVDKTFSDADTKGDGRIDQDEWKAFVSKHPSLIKNMTLPYLKDITLAFPSFVVNSDVDDADVCV* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2494 216 SUPERFAMILY EF-hand 23 203 IPR011992 -
Amo17g2494 216 CDD EFh 109 179 IPR002048 GO:0005509
Amo17g2494 216 ProSiteProfiles EF-hand calcium-binding domain profile. 105 140 IPR002048 GO:0005509
Amo17g2494 216 Gene3D - 19 212 - -
Amo17g2494 216 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
Amo17g2494 216 PANTHER CALCINEURIN B 1 213 IPR045198 GO:0005509|GO:0019722|GO:0019900
Amo17g2494 216 PRINTS Recoverin family signature 76 97 - -
Amo17g2494 216 PRINTS Recoverin family signature 123 141 - -
Amo17g2494 216 PRINTS Recoverin family signature 169 189 - -
Amo17g2494 216 Pfam EF-hand domain pair 50 95 IPR002048 GO:0005509
Amo17g2494 216 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Amo17g2494 216 Pfam EF-hand domain pair 107 177 IPR002048 GO:0005509
Amo17g2494 216 PANTHER CALCINEURIN B-LIKE PROTEIN 4 1 213 - -
Amo17g2494 216 SMART efh_1 72 100 IPR002048 GO:0005509
Amo17g2494 216 SMART efh_1 109 137 IPR002048 GO:0005509
Amo17g2494 216 SMART efh_1 153 181 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2494 Amo-Chr17 122443817 122445520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2494 26 214 EF-hand Containing Proteins AT5G24270 73.016 1.63e-100 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2494 K06268 - mnt:21390233 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2494 17 122443817 122445520 Amo17g2494 17 122443817 122445520 ECH
Amo08g0441 08 8464099 8468639 Amo17g2494 17 122443817 122445520 hybridization