Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0441 ATGGGATGCAAGTATTCAAAGAAAGTCATAAATAAAGTACCGGGTTACGAGGAACCCATTGTTCTTGCTTCTCAGACACCTTGTGAGTATCCATCATCAGCTGTTAATGTGAGTGAAGTTGAGGCCTTATATGAGCTTTACAAGAAGTTGAGCAATTCAATTATTGCAGATGGTCTTATTCACAGGGAAGAATTCCAACTTGCACTCTTCAGGAATAAAAACAAGAGAAATCTGTTTGCAGACAGGATTTTTGATCTATTTGATATCAAGAAAAATGGGGTCATTGAGTTTGGAGAATTTGTTCGATCATTGGGTGTATTTCACCCAGATGCATCTATGGAAGACAAGATCAAATTTGCTTTTAGGTTATATGATCTAAGGCAGACAGGGTATATTGAACGTGAAGAGTTGAAGGAGATGGTGTTGGCACTTCTACACGAGTCTGATCTTGTGCTTTCAGATGATATCGTGGAATCCATCGTGGATAAGACTTTTAGTGATGCTGATACAAAAGGTGATGGAAGGATTGATCAGGATGAGTGGAAAGCATTTGTGTCTAAGCATCCATCCTTGATAAAGAACATGACTCTACCATATCTAAAGGATATAACCTTAGCATTTCCCAGTTTTGTTGTAAATTCAGATGTTGATGATGCAGATGTATGTGTATGA 672 0.3795 MGCKYSKKVINKVPGYEEPIVLASQTPCEYPSSAVNVSEVEALYELYKKLSNSIIADGLIHREEFQLALFRNKNKRNLFADRIFDLFDIKKNGVIEFGEFVRSLGVFHPDASMEDKIKFAFRLYDLRQTGYIEREELKEMVLALLHESDLVLSDDIVESIVDKTFSDADTKGDGRIDQDEWKAFVSKHPSLIKNMTLPYLKDITLAFPSFVVNSDVDDADVCV* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0441 223 Gene3D - 31 219 - -
Amo08g0441 223 PANTHER CALCINEURIN B 1 220 IPR045198 GO:0005509|GO:0019722|GO:0019900
Amo08g0441 223 PRINTS Recoverin family signature 83 104 - -
Amo08g0441 223 PRINTS Recoverin family signature 130 148 - -
Amo08g0441 223 PRINTS Recoverin family signature 176 196 - -
Amo08g0441 223 Pfam EF-hand domain pair 57 102 IPR002048 GO:0005509
Amo08g0441 223 SMART efh_1 116 144 IPR002048 GO:0005509
Amo08g0441 223 SMART efh_1 79 107 IPR002048 GO:0005509
Amo08g0441 223 SMART efh_1 160 188 IPR002048 GO:0005509
Amo08g0441 223 PANTHER CALCINEURIN B-LIKE PROTEIN 4 1 220 - -
Amo08g0441 223 CDD EFh 116 186 IPR002048 GO:0005509
Amo08g0441 223 Pfam EF-hand domain pair 114 184 IPR002048 GO:0005509
Amo08g0441 223 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Amo08g0441 223 SUPERFAMILY EF-hand 35 210 IPR011992 -
Amo08g0441 223 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Amo08g0441 223 ProSiteProfiles EF-hand calcium-binding domain profile. 156 191 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0441 Amo-Chr8 8464099 8468639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0441 32 221 EF-hand Containing Proteins AT5G24270 72.632 5.81e-101 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0441 K06268 - mnt:21390233 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0441 08 8464099 8468639 Amo17g2494 17 122443817 122445520 hybridization