Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2287 ATGGCGAAATCGAGCGCCGACGATGCTGAGCTCCGGCGAGCATGCGAGGCCGCGATTGAGGGGAAGCAGAAGGTGGTGCTTTCGATCAGAGTTGCAAAGACAAGCGGGGGCTCTGCATGGGGTAAATCTTCCAAGCTTGGCCGCCAAATGGCTAAGCCTAGGGTCCTCGCTCTCTCGACAAAACAAAAAGGTCACAGGACGAAAGCGTTTCTTCGAGTTTTGAAGTATTCCAATGGAGGAGTTCTCGAGCCTGCTAAGATATACAAGCTGAAGCACCTTTCAAAAGTGGAAGTTGTAAGAGAGGATCCCAGTGGATGTACATTTATACTGGGATTTGATAACCTGAGAACCAAGAGAACGGCTCCTCCGGAGTGGACAATGCGCAATATTGATGACAGGAATCGCCTCCTGCTTTTGATCTTAAATATCTGCAAAGATATTGGAGGTCGCATTCCTAAGGTTGTTGGCATTGACGTTGTGGAGATGGCTCTTTGGGCTAAGGAAAATACATCCACAGTTTCCACTCAAACCCACACAGAAGTAGATGGTCCTGTTGAATCTGCTGCTATTTTTACGACAGAAACAGAACTGAATGTCAATGTCGAAAAGGAACTTGTCTCCCAGGCTGAGGAAGAGGACATGGAGGCTCTTTTGGGGACTTATGTCATGGGAATTGGTGAAGCAGAGGTATTAACTGAAAGGTTGAAGAGGGAGCTGCAGGCTCTTGAAGCAGCAAATGTCCACGCCATTTTAGAAACTGAACCTTTAATAGATGAGGTATTGAAAGGGATTGAGGCAGCAACGAATTGTGTGGAAGACATGGATGAATGGTTAGGCATGTTCAATGTGAAACTTCGACACATGAGGGAGGATATTGAATCGATCGAAACCCGTAATAACAAGTTGGAATTGCAATCAGTAAATAACAGACGTCTCATGGAGGAGCTTGATGGGCTTCTCCAGATATTGAAAATCCCTCCTGAACATGAAGCATTTTTGACAGGAGATAAATTTGAAGAACAACAAATGCTTCAAAGTACAGGAGCATTGGAGTGGTTGAGTGATGCTATGCGTGGTATCGTTGCAACTAAAGTAGATCCTGTTTATGGAAATATGACAGCTGTTCACGAGAAGCGAGGGGAGCTTCAACTATTAAAGTCTACTTTTGTTTTCAAAGTTACAACATTCTTAAGAAATTATTTCGCTAATTTTGTGGAATACTTGTTAAAGGATAAAAATAACTTTTCTCAGCGTGGACAGTTGAAAAGACCAGATCATTCTGAACTACGATACAAGTGCAGGACATATGCACGTCTTTTGCAACATTTAAAGATGCTTGATAAGAACAGCTTGCTTCAATTGAGGAAAAATTATTGCTCTTCTATGAACTTGCTTCTTCGCAGGGAGGCCTGTGAGTTTGCTAATGAAATTCGTGCTAATACCAAAGCGCCTAGAAATGTAGCTGTTTGGCTTGATAGTCCTGCAGGTGCTGGTCAGAATGTAAATTCTGCCGACACTTCTGTAGTTTCTGATGCATACACAAGAATGCTCACAGTTTTTGTTCCACTTCTGGTTGATGAGTGTTCATTTTTTGCACAATTCATGTGCTTTGAAGTTCCTATACATGCTCCTCCAGGAGGAGTTGACGAAGATGATGATAATGATGATGATTTGGGAATCATGGACATTGACGAGAAAGACGGTAAATCTGGGAAAAATCCTGCAAATCCTCCAAATCCTGATGAGCTTGCAGCTCTAAATAATTCACTTCAAGATTTGCTTGATGGAATGCAAGAAGACTTCTATAATGTTATAGATTGGGCATTCAAGATCGATCCTCTACGCTGCATATCAATGCATGGAATAACAGAACGCTATCTCTTTAGTCCAAAAGCTGATGCAGCGGGAGTTGTACGCATTTTGCTTGGCGACCTGGAGTCTCGTATATCTATGCAATTCAGCCGTTATGTTGATGAAGCTTGCCATCATATTGAAAAGTTTGAGCGCAATACTCGCCAAACAGGTGTCTTGCCCTACATTCCCAGATTTGCAACCCTTGCAACACGGATGGAGCAGTACATCACAGGACAGTCGAGAGACCTGGTTGACCAAGCATACATGAAATTTGTCACCATAATGTTTGTAACTTTAGAAAAAGTTGCACAAGCAGAGCCAAAATATGCGGATATATTTCTTTTTGAGAATTATGCCGCCTTTCAAAACAGTTTGTATGACCTTGCCAATGTTGTGCCCACTTTGGCCAAGTTTTACCATCAGGCTAGTGAAGCCTATGAGCAAGCTTGCTCACGCCACATTAGCATGATTATCTACTATCAATTTGAACGCCTCTTCCAGTTTGCTCGAAAGATTGAGGACCACATAAGCAATAATGTTCAACTCGAAGAGATTGCTTTCCAAGTTGGGATGTCAAAATCAGATCTACGGAAGACGCTAAAAGCCAGTTTATCTGGGGTGGACAAGTCCGTAGCTGCAATGTACAAGAAATTGCAAAAAAATTTAACTTCGGAGGAACTGCTGCCTTCCTTGTGGGAAAAATGCAAGAAAGATTTCCTTGCTAAGTATGAAAGTTTTGCCTTTCTTGTCGGTAAGATATACCCTACCGAATCAATCCCTTCTATAACAGAGATGAGAGACCTTTTAGCCAACATGTAA 2673 0.4242 MAKSSADDAELRRACEAAIEGKQKVVLSIRVAKTSGGSAWGKSSKLGRQMAKPRVLALSTKQKGHRTKAFLRVLKYSNGGVLEPAKIYKLKHLSKVEVVREDPSGCTFILGFDNLRTKRTAPPEWTMRNIDDRNRLLLLILNICKDIGGRIPKVVGIDVVEMALWAKENTSTVSTQTHTEVDGPVESAAIFTTETELNVNVEKELVSQAEEEDMEALLGTYVMGIGEAEVLTERLKRELQALEAANVHAILETEPLIDEVLKGIEAATNCVEDMDEWLGMFNVKLRHMREDIESIETRNNKLELQSVNNRRLMEELDGLLQILKIPPEHEAFLTGDKFEEQQMLQSTGALEWLSDAMRGIVATKVDPVYGNMTAVHEKRGELQLLKSTFVFKVTTFLRNYFANFVEYLLKDKNNFSQRGQLKRPDHSELRYKCRTYARLLQHLKMLDKNSLLQLRKNYCSSMNLLLRREACEFANEIRANTKAPRNVAVWLDSPAGAGQNVNSADTSVVSDAYTRMLTVFVPLLVDECSFFAQFMCFEVPIHAPPGGVDEDDDNDDDLGIMDIDEKDGKSGKNPANPPNPDELAALNNSLQDLLDGMQEDFYNVIDWAFKIDPLRCISMHGITERYLFSPKADAAGVVRILLGDLESRISMQFSRYVDEACHHIEKFERNTRQTGVLPYIPRFATLATRMEQYITGQSRDLVDQAYMKFVTIMFVTLEKVAQAEPKYADIFLFENYAAFQNSLYDLANVVPTLAKFYHQASEAYEQACSRHISMIIYYQFERLFQFARKIEDHISNNVQLEEIAFQVGMSKSDLRKTLKASLSGVDKSVAAMYKKLQKNLTSEELLPSLWEKCKKDFLAKYESFAFLVGKIYPTESIPSITEMRDLLANM* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2287 890 MobiDBLite consensus disorder prediction 545 581 - -
Amo17g2287 890 PANTHER SEC3/SYNTAXIN-RELATED 1 890 - -
Amo17g2287 890 SMART Sec3_PIP2_bind_2 49 147 IPR028258 -
Amo17g2287 890 Coils Coil 285 305 - -
Amo17g2287 890 Coils Coil 225 252 - -
Amo17g2287 890 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 1 890 - -
Amo17g2287 890 Pfam Exocyst complex component Sec3 228 482 IPR019160 GO:0000145|GO:0006887
Amo17g2287 890 Pfam Exocyst complex component Sec3 551 873 IPR019160 GO:0000145|GO:0006887
Amo17g2287 890 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 50 145 IPR028258 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2287 Amo-Chr17 116623637 116635789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2287 1 890 EF-hand Containing Proteins AT1G47550 73.252 0.0 1353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2287 K19983 - csv:101207115 1296.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3920 16 150984972 150994970 Amo17g2287 17 116623637 116635789 PCT
Amo17g2287 17 116623637 116635789 Amo16g3920 16 150984972 150994970 PCT