Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3920 ATGGCCAAACCGAGTGCCGACGATGGCGAGCTCCGGCGGGCATGCACGGCGGCGATTGAGGATCCCCACCAGAAGATCGTGATGGCGATCAGAGTAGCGAAATCCCACGGGATCTTGGGAAAATCTTCCAAGCTTGGCCGCCAGATGGCGAAGCCAAGGGTTCTTGCTCTCTCCATGCAATCAAAAGGTCAGAGGACAACAGCATTTCTTCATGTTTTGAAGTATTCTACGGGAGGAGTTCTTGAGCCTGCTAAACTATACAAGCTGAAGTACCTCTCAAAAGTGGAAGTTTTGACAAATGACCCCAGTGGATGTACATTTACGCTGGGATTTGATAACCTCAGAAGCCAGAGCGTGGCTCCTCCTCAGTGGACAATGCGCAATATTGATGACAGGAATCGCCTCCTTCTTCGCATCCTGAACACATGCAAAGATGTTTTGGGTCGCCTCCCTAAGGTTGTTGGTATAGATGTTGTTGAGATGGCTCTTTGGGCTAAGGAAAATACACCCACGGCTCCTGCTCAGAGTAAAGTTCGAGATGGTGTTCCTGTTGCTTCTGCTGTTTCTGAGACGGAATTGAAAGTCAATGTCGAAAAGGAACTTGTCTCCCAGGCAGAGGAAGAGGACATGGAGGCTCTTTTGGGAACTTATGTCATAGGTGTTGGTGAAGCTGAGGCATTTTCTGAAAGGTTGAAGAGAGAGCTTCAAGCTCTAGAAGCAGCAAACGTGCATGCCATTTTAGAAAGTGAACCTTTGATGGATGGGGTGATGCAAGGACTTGAGTCAGCAACAAATTGTGTGGATGACATGGATGAATGGTTAAACATATTTAACGTGAAACTCCGGCACATGAGAGAGGACATTGAATCAATAGAATCCCGCAATAACAAATTGGTAATGCAATCGGTGAACAACAAATCTCTTATTGAGGAGCTCGATAAGCTTCTTGAAGGATTGAATGTCCCTCCAGAGTATGCATCAAGTTTGACAGGAGGTTCATTTGATGAAGCTAGAATGCTTCAGAATGTAGAAGCATGTGAATGGTTGACTGGTGCCTTACGTGGTCTTGAAGCGCCTAATCTAGACCCTGCATATGCAAATATGAGAGCTGTTAAAGAGAAGCGTGCAGAACTTGAAAAATTAAAAACTACTTTTGTTAGGAGAGCATCAGAATTCTTGAGGAATTACTTTGCTAGTTTGGTGGATTTCATGATAAGTGATAAAAGCTACTTCTCTCAGCGAGGACAGTTGAAGAGGCCTGATCATGCGGATTTGCGGTACAAATGCAGGACATATGCACGTCTCTTGCAACACTTGAAGAGTCTTGACAAGAATTGCTTGGGTCCATTGAGAAAAGCTTATTGCAGTTCTCTAAATTTGCTTCTTCGCCGAGAGGCTCGTGAATTTGCAAATGAACTTCGTGCTAGTACTAAAGCATCTAGGAACCCCACGGTTTGGCTTGAAGGTTCTACAGGTTCTGGTCAGAATGTCAATGCCACTGACACTTCAACAGTCTCTGATGCTTATGCAAAGATGCTAACAATTTTTATCCCACTTCTGGTGGATGAGAGTTCATTTTTTGCACACTTCATGTGCTTTGAAGTTCCTACGCTTGTTCCTCCAGGAGGTGTTGTTAATGGTAATAAACCTGAATATGATGACGATGATGATTTAGGAATTATGGACATTGATGACAATGACAGTAAATCTGGTAAAAATTCTGCCGAGCTTGCAGCTTTAAACGAATCACTTCAGGATTTGCTTGATGGAATTCAAGAAGACTTCTACGCGGTTGTAGATTGGGCATACAAGATTGATCCCTTGCGCTGCATATCAATGCATGGAATAACGGAACGATATCTTTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGCCTTTTGCTTGGTGACCTAGAGGCTCGTATATCTATGCAGTTTGGCCGTTTTGTTGATGAAGCTTGCCATCAAATTGAAAGGAATGAACGCAATGTTCGCCAAGTTGGTGTCCTATCCTACATTCCCAGATTTGCAACCCTGGCAACTCGGATGGAGCAGTATATTCAGGGACAGTCTAGGGATTTGGTAGACCAGGCATACACAAAATTTGTTAGCATAATGTTTGCGACTTTGGAAAAAATAGCACAAACAGATCCAAAGTATGCTGATATTTTTCTCTTAGAGAACTATGCCGCCTTTCAAAATAGTTTGTATGACCTTGCCAACATTGTGCCTACTTTGGCTAAGTTTTATCACCAGGCTAGTGAAGCCTATGAGCAAGCTTGTACGCGCCATATTAGCATGATAATCTATTATCAATTCGAGCGCCTTTTTCAATTTCATCGGAGGATTGAGGACTTGATGTTCACAGTTGCACCTGAGGAGATTCCTTTCCAACTCGGGCTATCAAAGATGGATCTTCGAAAGATGCTAAAATCCAGTTTATCGGGGGTTGACAAGTCCATTGCTGCAATGTACAAGAAATTGCAGAAGAACTTGACTTCAGAAGAACTATTACCCTCCTTATGGGATAAATGCAAGAAGGAATTTGTTGACAAGTACGAAAGTTTTGCACAACTTGTGGCTAAGATTTACCCTAATGAGAATATCCCTTCGGTAACAGAGATGAGAGAACTTTTAGCCTCCATGTAA 2652 0.4333 MAKPSADDGELRRACTAAIEDPHQKIVMAIRVAKSHGILGKSSKLGRQMAKPRVLALSMQSKGQRTTAFLHVLKYSTGGVLEPAKLYKLKYLSKVEVLTNDPSGCTFTLGFDNLRSQSVAPPQWTMRNIDDRNRLLLRILNTCKDVLGRLPKVVGIDVVEMALWAKENTPTAPAQSKVRDGVPVASAVSETELKVNVEKELVSQAEEEDMEALLGTYVIGVGEAEAFSERLKRELQALEAANVHAILESEPLMDGVMQGLESATNCVDDMDEWLNIFNVKLRHMREDIESIESRNNKLVMQSVNNKSLIEELDKLLEGLNVPPEYASSLTGGSFDEARMLQNVEACEWLTGALRGLEAPNLDPAYANMRAVKEKRAELEKLKTTFVRRASEFLRNYFASLVDFMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKNCLGPLRKAYCSSLNLLLRREAREFANELRASTKASRNPTVWLEGSTGSGQNVNATDTSTVSDAYAKMLTIFIPLLVDESSFFAHFMCFEVPTLVPPGGVVNGNKPEYDDDDDLGIMDIDDNDSKSGKNSAELAALNESLQDLLDGIQEDFYAVVDWAYKIDPLRCISMHGITERYLSGQKADAAGFVRLLLGDLEARISMQFGRFVDEACHQIERNERNVRQVGVLSYIPRFATLATRMEQYIQGQSRDLVDQAYTKFVSIMFATLEKIAQTDPKYADIFLLENYAAFQNSLYDLANIVPTLAKFYHQASEAYEQACTRHISMIIYYQFERLFQFHRRIEDLMFTVAPEEIPFQLGLSKMDLRKMLKSSLSGVDKSIAAMYKKLQKNLTSEELLPSLWDKCKKEFVDKYESFAQLVAKIYPNENIPSVTEMRELLASM* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3920 883 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
Amo16g3920 883 Coils Coil 188 208 - -
Amo16g3920 883 Coils Coil 221 248 - -
Amo16g3920 883 Coils Coil 281 301 - -
Amo16g3920 883 Pfam Exocyst complex component Sec3 572 867 IPR019160 GO:0000145|GO:0006887
Amo16g3920 883 Pfam Exocyst complex component Sec3 224 485 IPR019160 GO:0000145|GO:0006887
Amo16g3920 883 PANTHER EXOCYST COMPLEX COMPONENT SEC3B 1 883 - -
Amo16g3920 883 PANTHER SEC3/SYNTAXIN-RELATED 1 883 - -
Amo16g3920 883 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3920 Amo-Chr16 150984972 150994970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3920 1 883 EF-hand Containing Proteins AT1G47550 85.714 0.0 1575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3920 K19983 - gmx:100784141 1574.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3920 16 150984972 150994970 Amo16g3920 16 150984972 150994970 ECH
Amo16g3920 16 150984972 150994970 Amo17g2287 17 116623637 116635789 PCT
Amo17g2287 17 116623637 116635789 Amo16g3920 16 150984972 150994970 PCT