Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2232 ATGTCAGGGCGCCTTTGTATTGAAGAAGTAGCAGGGCAGGATGAAAGAAGAGAGCATTCAGAGGATGAAAGAAAGACAGCAATATACAGTCTGAAAAAGAAGGCAATAAATGCATCGAACAAGTTGAGGCATTCTTTTAAGAAGAAAAGAAGCAAAAAGAGTGWCAGCCGGAGTAATTCCCTGTYCATTGAGGATGTTCGAGACGCRAAGGAGCTTCAATCAGTCGATGTATTTCGACAGGCACTTATATCTGATAACTTGCTKCCCGCCAAACACGATGATTATCACACGTTATTGAGATTCTTGAAAGCCAGGAAGTTTGACATTGAGAAAGCAAAACACATGTGGGCCAACATGATACAATGGAGGAAAGACTATGGTACAGATACAATTATAGAGGATTTTGAGTTCAAGGAATTGCATGAAGTCCAGCAGTACTATCCACACGGTAATCATGGCGTAGATAAGGAAGGAAGACCTGTTTATATTGAAAGACTAGGCAAAGTTGATCCCAGCAAACTTATGCAAGTAACTAATATTGAAAGGTACTTGAGATACCATGTGCAGGGTTTTGAGAAAACATTTGCTGTTAAGTTTCCAGCTTGCTCAATAGCTGCTAAGAGACATATAGATTCAAGCACAACCATATTGGATGTTCAAGGCCTGGGTTTCAAAAATCTAACCAAGTCTGCACGGGAACTCATCACGCGCCTGCAGAAGATTGATGGTGATTACTATCCAGAAACACTCTACCAAATGTTTATCATCAATGCTGGCCCTGGTTTCAAGATGCTTTGGAACACGGTGAAAACATTCCTAGATCCCAAAACCACGTCAAAAATTCAAGTTCTCGGAAACAAGTTCCAGAGTAAATTACTTGAAGTTATTGATGCGAGTGAGCTGCCAGAATTTCTTGGTGGTACTTGCACTTGYGCTGATCGGGATGGTTGTATGAGATCTGATAAAGGGCCATGGCAAGACCCAAACATTATAAAGATGGTTCTCAATGGTGAAGTACATTGCTCTAGACAAATAGTAACAGATACTAACGATAAGGWGACCGCATTCGAATGCGATAGGACATCTTATCCAATGATAAGAAGTTGTGATACACCTACAGGAGAGTCAGGGTCTGAAGTTGACGAAATTACATCTCCCAAAGCAAGTGGGAATCATATAAACCCTATCTTGACTCCAGTGCATGAAGAAGCAAGAYTGGTTGGAAAGGCTAATCATGCTGCTAAGGGTTTCTCTWAGCATGATGAGTATATACCAATGGTTGACAAGGCTGTGGATGTTGGCTGGAAGGAAAAGCAAGCAACATCTCAAAACTCATCTGCCTCAACAACAGAAAAATTTCTATCGAGTAATGAAAAATGTCCTGATGGAAACCGAGCATATATCTGGACTGTCATAATGAGCTTCTTCTTAGCCCTYGTTACTTTTGCCCGTTCGATAGCATTTGGTGGTGTTAAAGGAATACTGAGGCATGAATCTAATTCTTCTCAAAGTATAACAAGCATGACTGTTGATTCAGTGTCTATGGAAGAATCTGGTACTCCTTCACCTGCTCCTGAGTTCACAGAGACAAACCTCCCCGCATCAGCCTTGAAACGCCTTGGCGAGCTTGAAGAGAAAGTTAACATGCTACAATCAAAATCTAATGTGATGACATATGAGAAAGAGGAGCAGCTGAATGCTGCAGTTTATCGAGTTGATGCATTGGAATCAGAGTTGATTGCTACAAAGAAGGCTCTATACGAAGCTTTGATAAAACAAGAAGAATTAATGGAATACATAGAAAGACAGGACAAACACAAAAGCATGGTAAGTCAAAGATATTTGTACCATATATATATATTATTTTACAAAACAGATGTTGGTTACCATCCTCCACGATATAGGAAACTCTAA 1914 0.4013 MSGRLCIEEVAGQDERREHSEDERKTAIYSLKKKAINASNKLRHSFKKKRSKKSXSRSNSLXIEDVRDAKELQSVDVFRQALISDNLLPAKHDDYHTLLRFLKARKFDIEKAKHMWANMIQWRKDYGTDTIIEDFEFKELHEVQQYYPHGNHGVDKEGRPVYIERLGKVDPSKLMQVTNIERYLRYHVQGFEKTFAVKFPACSIAAKRHIDSSTTILDVQGLGFKNLTKSARELITRLQKIDGDYYPETLYQMFIINAGPGFKMLWNTVKTFLDPKTTSKIQVLGNKFQSKLLEVIDASELPEFLGGTCTCADRDGCMRSDKGPWQDPNIIKMVLNGEVHCSRQIVTDTNDKXTAFECDRTSYPMIRSCDTPTGESGSEVDEITSPKASGNHINPILTPVHEEARLVGKANHAAKGFSXHDEYIPMVDKAVDVGWKEKQATSQNSSASTTEKFLSSNEKCPDGNRAYIWTVIMSFFLALVTFARSIAFGGVKGILRHESNSSQSITSMTVDSVSMEESGTPSPAPEFTETNLPASALKRLGELEEKVNMLQSKSNVMTYEKEEQLNAAVYRVDALESELIATKKALYEALIKQEELMEYIERQDKHKSMVSQRYLYHIYILFYKTDVGYHPPRYRKL* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2232 637 PRINTS Cellular retinaldehyde-binding protein signature 97 119 - -
Amo17g2232 637 PRINTS Cellular retinaldehyde-binding protein signature 299 308 - -
Amo17g2232 637 PRINTS Cellular retinaldehyde-binding protein signature 266 285 - -
Amo17g2232 637 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 139 313 IPR001251 -
Amo17g2232 637 SMART CRAL_TRIO_N_2 94 119 IPR011074 -
Amo17g2232 637 Pfam CRAL/TRIO, N-terminal domain 92 118 IPR011074 -
Amo17g2232 637 SUPERFAMILY CRAL/TRIO domain 139 332 IPR036865 -
Amo17g2232 637 MobiDBLite consensus disorder prediction 367 394 - -
Amo17g2232 637 Pfam CRAL/TRIO domain 145 307 IPR001251 -
Amo17g2232 637 SUPERFAMILY CRAL/TRIO N-terminal domain 68 135 IPR036273 -
Amo17g2232 637 Gene3D - 127 338 IPR036865 -
Amo17g2232 637 MobiDBLite consensus disorder prediction 367 392 - -
Amo17g2232 637 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 12 608 - -
Amo17g2232 637 CDD SEC14 140 308 IPR001251 -
Amo17g2232 637 SMART sec14_4 139 310 IPR001251 -
Amo17g2232 637 Gene3D - 36 126 - -
Amo17g2232 637 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 12 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2232 Amo-Chr17 114761753 114766152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2232 98 304 Acyl Lipid Metabolism Gene Families AT5G47730 31.579 2.86e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2232 - - gmx:100812774 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2232 17 114761753 114766152 Amo17g2232 17 114761753 114766152 ECH
Amo13g0774 13 9581064 9585079 Amo17g2232 17 114761753 114766152 ECH