Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g0774 ATGTGTGACACTTTGTCATCTTTATCTAATTCAGATCGACCTTATAAAGTTGGTGTTGAAATTGAATTAATGGAGGATGATGAAAAGAAGCCAAGGAGGCTTGGGTCATTGAAGAAGGTAGCAATGAATGCATCTTCAAAGTTTAGACATACATTAACAAAGAAAGGAAGGAAGCATAGTAGGGTTATGTCTATTATTGATGATCATCTTAATTCAGAAGACTTGCAAGCCGTTAACACTCTGCGCCAAGCACTTGTTCAGGATGATCTTTTACCCCCAAAATTTGATGATCACCATTTGATGCTAAGAAAATTCGACATTGAGAAAACAAAGCAAATGTGGGGAGATATGCTTGTGTGGAGAAAGGAGTTTGGTGCTGATACAATTATGGAGGATTTTGAATTCAAGGAGATAGATGAAGTAATGAAATACTACCCACAAGGGCATCATGGAGTTGATAAAGAAGGAAGACCAGTGTACATTGAAAGAATAGGTCAAGTTGACTCCAACAAGCTAATGCAAGTCACAACAATGGACCGTTATCTTAAATATCATGTTAAAGAGTATGAGAGAACATTTTCACTTAAATTCCCTGCTTGCTCAATCGCTGCAAGAAAACACATTGATCAAAGCACTGCTATCTTGGATGTCGAAGGAGTGGGTCTTAAAAGTTTTAACAAAGCTGCAAGGGACCTTGTCCAACGACTTCAAAAGATTGATGGTGATAATTATCCTGAGACCTTGCATCGCATGTATATCATCAATGCCGGTTCTGGATTTAGATTGCTATGGAATACTGTCCTAGGTAACAAATACCAAAGCAAATTGCTTGAAGTCATTGATGCCAGTGAACTTCCAGAATTCTTTGGTGGTACTTGCAATTGTGAAGGTGGTTGCATGCTTTCTGACAAGGGTCCATGGAAAAGCCAAGAAATCTTGAAGGTGGTTCAAAAAAATGAGGAAAAAAGAATCAACAAAACCTTATCCGAAATTAAGGAGAAAATAATCATTGAAGATGAGACATTATACCAAAAGGAAAGTGATTCTCACAACAAAGAGTTAGTTAAGAAGGAAGTGCAATATGTGGTGCCAAAAGTGGAACATCCTGAAGCATCTCCAATTGCTGAAGTTGCAAAACAATGTAGTGCATATCAATATGATGCTTTTCTCCCAATGGTTGATAAGTCTATTAATGGATCTTGGAAGAAAACAGTAGAAAATGATCAATTTTCACTTTCTAAAGATTGTTACCCTGTCGATACTACTTCTTATGGTCGTTCAACTCAAGGTTTTGGTGGATTCATGGCCTTCATAATGGGAATCATTGCCATGATCCGCTTAACGAGGGCAATGCCGAAGAGAATCTGCCCCATGGCCGAGCATGATGATTGTAACCCGATTTATTATGACGGCACTGTGATGAAAGCACGTAACGTTTCCATGGAGGAGCAGATGGCGATGATGAGGCGCATGCTTGAACTAGAAGAGAAGGTGCAAGAACTCAGCAAGAGACCAGAAATGCCTCCAGAAAAAGAGTTGATTCTTAATAATGCTCTAAATAGAGTCAATATTCTTGAAGAAGAGTTAGACATGGCCAAAACGGCACTTGAAGCTGCACATCTTCGACTAGTAGAACTCCAAGCCTACATTGACAAAAAGAAGAAAAAGACACTG 1674 0.3883 MCDTLSSLSNSDRPYKVGVEIELMEDDEKKPRRLGSLKKVAMNASSKFRHTLTKKGRKHSRVMSIIDDHLNSEDLQAVNTLRQALVQDDLLPPKFDDHHLMLRKFDIEKTKQMWGDMLVWRKEFGADTIMEDFEFKEIDEVMKYYPQGHHGVDKEGRPVYIERIGQVDSNKLMQVTTMDRYLKYHVKEYERTFSLKFPACSIAARKHIDQSTAILDVEGVGLKSFNKAARDLVQRLQKIDGDNYPETLHRMYIINAGSGFRLLWNTVLGNKYQSKLLEVIDASELPEFFGGTCNCEGGCMLSDKGPWKSQEILKVVQKNEEKRINKTLSEIKEKIIIEDETLYQKESDSHNKELVKKEVQYVVPKVEHPEASPIAEVAKQCSAYQYDAFLPMVDKSINGSWKKTVENDQFSLSKDCYPVDTTSYGRSTQGFGGFMAFIMGIIAMIRLTRAMPKRICPMAEHDDCNPIYYDGTVMKARNVSMEEQMAMMRRMLELEEKVQELSKRPEMPPEKELILNNALNRVNILEEELDMAKTALEAAHLRLVELQAYIDKKKKKTL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g0774 558 CDD SEC14 135 292 IPR001251 -
Amo13g0774 558 Coils Coil 515 542 - -
Amo13g0774 558 SUPERFAMILY CRAL/TRIO N-terminal domain 68 133 IPR036273 -
Amo13g0774 558 Coils Coil 484 504 - -
Amo13g0774 558 Gene3D - 59 124 - -
Amo13g0774 558 SUPERFAMILY CRAL/TRIO domain 137 317 IPR036865 -
Amo13g0774 558 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 137 297 IPR001251 -
Amo13g0774 558 PANTHER SEC14P-LIKE PHOSPHATIDYLINOSITOL TRANSFER FAMILY PROTEIN 11 556 - -
Amo13g0774 558 Gene3D - 125 321 IPR036865 -
Amo13g0774 558 SMART sec14_4 137 294 IPR001251 -
Amo13g0774 558 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 11 556 - -
Amo13g0774 558 Pfam CRAL/TRIO domain 143 291 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g0774 Amo-Chr13 9581064 9585079 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g0774 100 288 Acyl Lipid Metabolism Gene Families AT5G47730 24.390 5.33e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g0774 - - gmx:100792335 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g0774 13 9581064 9585079 Amo13g0774 13 9581064 9585079 ECH
Amo13g0774 13 9581064 9585079 Amo17g2232 17 114761753 114766152 ECH