Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2208 ATGCCTATGGTCCTTTTGCCCCTATTTTTTCGTGAAACCATGGCTTCGCACATCTTCTCCCTTCTTCTTATGTTCTTCTTCGTCACTCTCGTCTCTGCTTCTTCCTCCGACACTTCCCAACTATTCCGGAGCTGGTGTGACCACCACGGCAAGARATACTCCTCCGACGAAGAGAGAAGCTACCGCCTCAAYGTCTTCCSGGACAACTATGACTATGTCCAGCGTCACAACCAGATGGCTAATTCCCCTTATACCCTCTCCCTCAACGCCTTCGCCGATCTTACCCACCAAGAATTCAAGGCCTCTCATCTTGGCGCTCTTTCCTCTTCCTTCCTCAGATTCAAGAATCATCAAGATCACCAGTCCCGCTATCACAATGACAATGACAATGACAATAATATCCTCCGTCAGGTTCCTTCTTCAATTGATTGGAGAAATGAAGGGGCGGTTACTCCCGTCAAAAACCAAGGAAGCTGCGGGGCTTGTTGGGCGTTCTCTGCAACAGGAGCTATTGAAGGTATAAATAAGATTGTGACAGGGACCCTTGAAAGCCTTTCTGAACAAGAACTGGTTGATTGTGATAAAAAATACAACAGCGGCTGTGAAGGTGGTCTCATGGACTATGCTTATCAATTTGTGATTGATAACCACGGAATCGACACTGAGAGCGATTATCCATTCCTTGCTCATGATGCCGCTTGCAACAAGAACAAGATGAAGAGGCGTGTTGTTACAATTGATGGTTATACTGATGTGCTCCCAAGTAATGAGAAGAAGCTCCTAGAGGCTGTTGCAACRCAGCCTGTAAGTGTAGGCATATGTGGCAGTGCTAGGGCTTTTCAGTTATACTCTCAGGGTATCTTCACCGGACCATGTTCAACTGCTTTGGATCATGCAGTGTTGATTGTAGGGTATGGTTCAGAGAACGGAGTAGATTATTGGATTGTTAAGAACTCGTGGGGAACATCATGGGGAATGAATGGTTACATACACATGGTGCGAAACAACGGTTCTCAAGGGATATGCGGCATCAACATGCTAGCTTCGTATCCAACCAAGACGACGCCTAATCCTCCTCCTCCGCCACCACCAGGTCCTACAAAATGTAATCTGTTTACTTACTGTCCAGCAGCGGAAACCTGTTGCTGCTCGTGGCGTGTTCTTGGGTTGTGCTTATCATACAAATGCTGTGGGTTAGACTCTGCTGTGTGCTGTAAGGACAATAGCCATTGTTGCCCTCAGGATTATCCTATTTGTGATATAAGAAACGCTCAATGTCTTAAGAGAGTTTCGAATGGGACAACAACGATGGCATATGAGAACAAAGACTCTATCCGTAGGTCAAGAGGTTGGAGCTCTGGTTAA 1365 0.4615 MPMVLLPLFFRETMASHIFSLLLMFFFVTLVSASSSDTSQLFRSWCDHHGKXYSSDEERSYRLNVFXDNYDYVQRHNQMANSPYTLSLNAFADLTHQEFKASHLGALSSSFLRFKNHQDHQSRYHNDNDNDNNILRQVPSSIDWRNEGAVTPVKNQGSCGACWAFSATGAIEGINKIVTGTLESLSEQELVDCDKKYNSGCEGGLMDYAYQFVIDNHGIDTESDYPFLAHDAACNKNKMKRRVVTIDGYTDVLPSNEKKLLEAVATQPVSVGICGSARAFQLYSQGIFTGPCSTALDHAVLIVGYGSENGVDYWIVKNSWGTSWGMNGYIHMVRNNGSQGICGINMLASYPTKTTPNPPPPPPPGPTKCNLFTYCPAAETCCCSWRVLGLCLSYKCCGLDSAVCCKDNSHCCPQDYPICDIRNAQCLKRVSNGTTTMAYENKDSIRRSRGWSSG* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2208 454 PRINTS Papain cysteine protease (C1) family signature 313 319 IPR000668 GO:0006508|GO:0008234
Amo17g2208 454 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Amo17g2208 454 PRINTS Papain cysteine protease (C1) family signature 156 171 IPR000668 GO:0006508|GO:0008234
Amo17g2208 454 PANTHER OS05G0508300 PROTEIN 26 386 - -
Amo17g2208 454 SMART Inhibitor_I29_2 42 99 IPR013201 -
Amo17g2208 454 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 156 167 IPR000169 -
Amo17g2208 454 Pfam Granulin 380 427 IPR000118 -
Amo17g2208 454 Pfam Papain family cysteine protease 138 351 IPR000668 GO:0006508|GO:0008234
Amo17g2208 454 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 296 306 IPR025660 -
Amo17g2208 454 SUPERFAMILY Cysteine proteinases 37 352 IPR038765 -
Amo17g2208 454 SMART GRAN_2 369 426 IPR000118 -
Amo17g2208 454 CDD Peptidase_C1A 139 350 IPR039417 -
Amo17g2208 454 Gene3D Granulin 367 436 IPR037277 -
Amo17g2208 454 SMART pept_c1 138 352 IPR000668 GO:0006508|GO:0008234
Amo17g2208 454 Gene3D Cysteine proteinases 27 354 - -
Amo17g2208 454 Pfam Cathepsin propeptide inhibitor domain (I29) 42 99 IPR013201 -
Amo17g2208 454 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 313 332 IPR025661 -
Amo17g2208 454 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 26 386 - -
Amo17g2208 454 SUPERFAMILY Granulin repeat 366 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2208 Amo-Chr17 113221398 113223833 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2208 - - ahf:112705594 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2208 17 113221398 113223833 Amo17g2208 17 113221398 113223833 ECH
Amo08g0309 08 5724609 5726166 Amo17g2208 17 113221398 113223833 hybridization