Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0309 ATGGCCTTACGTTGTTCCTTGTCAAAAACACTGATCCTGACCTGCACCTTATGCTTAATATTTGTGCCTTTGGCACATGGCAACGATTTCTCCATTGTAGGGTATTCAACAGAGGACTTGAGGTCCATGGACAAGCTCATTGAACTCTTCGAGTCATGGATGTCGAAACACAGCAAGATCTACGACTCCATCGAGGAGAAGCTCCTTAGGTTCGAGGTTTTCAAGGACAATCTGAAGCACATTGACGAGAGGAACAAGGCTCTCACCAACTATTGGCTGGGGCTGAATGAGTTTGCTGATTTGACGCACCAAGAATTCAGAAACAAGTACCTTGGTCTCAAGATTGATCACTCCTCCGCAACAAGAAGAGACTCCTCACAATTCGCATACAGAGATGTTGATTTGCCTAAGTCAGTGGATTGGAGAAAGAAAGGTGCTGTCACCCAAGTGAAGAATCAAGGCTCATGCGGTAGCTGCTGGGCGTTTTCCACTGTTGCCGCGGTTGAAGGAATCAACCAGATTGTGACAGGAAATTTGACATCCTTGTCTGAACAAGAGTTGATCGATTGTGACACAACTTATAACAATGGTTGCAATGGTGGTCTCATGGACTATGCATTCTCCTTCATTGTACAAAATGGTGGTCTCCACAAAGAGGAAGACTATCCTTACATCATGGAGGAAGGCACTTGCGACATGAGAAAGGAAGAATCTGAGGTTGTCACCATCACCGGCTACCACGACGTGCCGCAGAACGACGAACAGAGCCTACTGAAGGCACTTGCAAACCAGCCCCTCAGTGTTGCCATAGAGGCTTCAGGAAGAGATTTCCAGTTCTATAGTGGGGGTGTGTTCGATGGACACTGCGGAACAGAACTTGATCATGGTGTGGCTGCTGTTGGTTACGGAACATCAAAAGGGTTGGATTATATCGTAGTCAAGAATTCATGGGGACCAAAGTGGGGGGAGAAAGGATACATCAGGATGAGGAGAAACATTGGAAAGCCTGAGGGTATTTGTGGTCTCTACAAGATGGCATCTTATCCCACTAAGAAGAAATAA 1062 0.4623 MALRCSLSKTLILTCTLCLIFVPLAHGNDFSIVGYSTEDLRSMDKLIELFESWMSKHSKIYDSIEEKLLRFEVFKDNLKHIDERNKALTNYWLGLNEFADLTHQEFRNKYLGLKIDHSSATRRDSSQFAYRDVDLPKSVDWRKKGAVTQVKNQGSCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELIDCDTTYNNGCNGGLMDYAFSFIVQNGGLHKEEDYPYIMEEGTCDMRKEESEVVTITGYHDVPQNDEQSLLKALANQPLSVAIEASGRDFQFYSGGVFDGHCGTELDHGVAAVGYGTSKGLDYIVVKNSWGPKWGEKGYIRMRRNIGKPEGICGLYKMASYPTKKK* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0309 353 Gene3D Cysteine proteinases 29 352 - -
Amo08g0309 353 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 310 329 IPR025661 -
Amo08g0309 353 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 27 351 - -
Amo08g0309 353 CDD Peptidase_C1A 136 349 IPR039417 -
Amo08g0309 353 Pfam Papain family cysteine protease 135 349 IPR000668 GO:0006508|GO:0008234
Amo08g0309 353 SMART pept_c1 135 350 IPR000668 GO:0006508|GO:0008234
Amo08g0309 353 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 293 303 IPR025660 -
Amo08g0309 353 PANTHER - 27 351 - -
Amo08g0309 353 Pfam Cathepsin propeptide inhibitor domain (I29) 50 106 IPR013201 -
Amo08g0309 353 PRINTS Papain cysteine protease (C1) family signature 153 168 IPR000668 GO:0006508|GO:0008234
Amo08g0309 353 PRINTS Papain cysteine protease (C1) family signature 295 305 IPR000668 GO:0006508|GO:0008234
Amo08g0309 353 PRINTS Papain cysteine protease (C1) family signature 310 316 IPR000668 GO:0006508|GO:0008234
Amo08g0309 353 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 153 164 IPR000169 -
Amo08g0309 353 SMART Inhibitor_I29_2 50 106 IPR013201 -
Amo08g0309 353 SUPERFAMILY Cysteine proteinases 45 350 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0309 Amo-Chr8 5724609 5726166 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0309 K16290 - gmx:100788466 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0309 08 5724609 5726166 Amo17g2208 17 113221398 113223833 hybridization