Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2197 ATGAGTAGTGGGCTGGGAGCCCATTTAATTAGGAGAAGGTCCAAGTCCCAGAGGCGAGTCTGGTTTGTTAAAGGGGCAAGAAAACAAAAGAAGGAAAGGGGAAAGTGTGAGAGAAAGAAGCATAAGAAGATGGAGGAGGAAAACGGTTATGTTGGCAGCAGCACCTCCAACTTGGAGACTTCCAAGGCGGAGCGATCTGTGTGGCTTATGAAGTGCCCTCTTGTCGTTTCCAAGTCGTGGCAGAACCACCCTCCTTCTCAGCCACTTGCCAAGGTCGTTCTCTCCCTTGATCCTCTCCACGCCGATGACCCCTCTGCTCTTCAGTTTACGATGGAGATGGCTGGGACTGATGCTGTTAATATGCCAAAAACATATTCCCTGAATATGTTTAAAGACTTTGTACCTATGTGTGTTTTCTCAGAGACAAGCCAAGGTGGCAAGGTTGCAATGGAAGGGAAGGTTGAACATAAGTTCGATATGAAGCCCCATGGTGAAAACATTGAAGAGTATGGCAAATTGTGTCGTGAGAGAACAAACAAATCCATGATAAAAAATCGACAAATACAGGTTATTGATAATGATCGTGGAGTATTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCAAAGGATAAGAAGAAGACACAGCCAGTTAAACAAACTGATACAAAGAGAACAAGAAGAGATAGAGGAGAACTGGAGGATATAATGTTCAAGTTATTTGAAAGACAGCCTAATTGGGCATTGAAGCAGCTTGTCCAGGAAACTGATCAACCTGCTCAATTCTTGAAAGAGATCCTGAATGAACTATGTGTATACAATAAAAGAGGTGCCAATCAAGGAACTTACGAGCTGAAGCCGGAATACAAGAAATCTGTTGTTGAAGATACAAATGCCGAATAA 915 0.4306 MSSGLGAHLIRRRSKSQRRVWFVKGARKQKKERGKCERKKHKKMEEENGYVGSSTSNLETSKAERSVWLMKCPLVVSKSWQNHPPSQPLAKVVLSLDPLHADDPSALQFTMEMAGTDAVNMPKTYSLNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDKKKTQPVKQTDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVVEDTNAE* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2197 304 Pfam TFIIF, beta subunit N-terminus 64 181 IPR040504 -
Amo17g2197 304 SUPERFAMILY Rap30/74 interaction domains 55 163 IPR011039 GO:0006367
Amo17g2197 304 MobiDBLite consensus disorder prediction 24 56 - -
Amo17g2197 304 Gene3D - 229 296 IPR036388 -
Amo17g2197 304 Pfam TFIIF, beta subunit HTH domain 231 294 IPR040450 -
Amo17g2197 304 MobiDBLite consensus disorder prediction 208 233 - -
Amo17g2197 304 CDD TFIIF_beta 57 162 - -
Amo17g2197 304 SUPERFAMILY "Winged helix" DNA-binding domain 229 295 IPR036390 -
Amo17g2197 304 PANTHER GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 49 300 IPR003196 GO:0005674|GO:0006366|GO:0006367
Amo17g2197 304 PANTHER TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT 49 300 - -
Amo17g2197 304 MobiDBLite consensus disorder prediction 24 38 - -
Amo17g2197 304 MobiDBLite consensus disorder prediction 216 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2197 Amo-Chr17 112829920 112833742 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2197 K03139 - gmx:100788473 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2197 17 112829920 112833742 Amo17g2197 17 112829920 112833742 ECH
Amo08g0148 08 2621372 2628289 Amo17g2197 17 112829920 112833742 hybridization