Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0148 ATGGTGCAGTTTGGAAGCAATCAAGAACATTGTTTGCGAAACTTGGCAAGAGAGCATACAAGGTCCCAGAGGCGAGTCTGGTTTGTTAAAGGGGGAAGAAAACAAAAGAAGGAAAGGGAAAGTGAGAGAAAGAAGCGGAAGAAGATGGAGGAGGAAAACGGTTATGTTGGCAGCAGCACCTCCAACTTGGAGACTTCCAAGGCGGAGCGATCTGTGTGGCTTATGAAGTGCCCTCTTGTCGTTTCCAAGTCGTGGCAGAACCACCCTCCTTCTCAGCCACTTGCCAAGGTCGTTCTCTCCCTTGATCCTCTCCACGCCGATGACCCCTCTGCTCTTCAGTTTACAATGGAGATGGCTGGGACTGATGCTGTTAATATGCCAAAAACATATTCCCTGAATATGTTTAAAGACTTTGTACCTATGTGTGTTTTCTCAGAGACAAGCCAAGGTGGCAAGGTTGCAATGGAAGGGAAGGTTGAACATAAGTTCGATATGAAACCCCATGGTGAAAACATTGAAGAGTATGGCAAATTGTGTCGTGAGAGAACAAACAAATCCATGATAAAAAATCGACAAATACAGGTTATTGATAATGATCGTGGAGTATTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCAAAGGATAAGAAGAAGACACAGCCAGTTAAACAAACTGATACAAAGAGAACAAGAAGAGATAGAGGAGAACTGGAGGATATAATGTTCAAGTTATTTGAAAGACAGCCTAATTGGGCATTGAAGCAGCTTCAATTCTTGAAAGAGATCCTGAATGAACTATGTGTATACAATAAAAGAGGTGCCAATCAAGGAACTTACGAGCTGAAGCCGGAATACAAGAAATCTGTTGTTGAAGATACAAATGCCGAATAA 906 0.4249 MVQFGSNQEHCLRNLAREHTRSQRRVWFVKGGRKQKKERESERKKRKKMEEENGYVGSSTSNLETSKAERSVWLMKCPLVVSKSWQNHPPSQPLAKVVLSLDPLHADDPSALQFTMEMAGTDAVNMPKTYSLNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDKKKTQPVKQTDTKRTRRDRGELEDIMFKLFERQPNWALKQLQFLKEILNELCVYNKRGANQGTYELKPEYKKSVVEDTNAE* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0148 301 Coils Coil 32 54 - -
Amo08g0148 301 PANTHER GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 51 297 IPR003196 GO:0005674|GO:0006366|GO:0006367
Amo08g0148 301 SUPERFAMILY Rap30/74 interaction domains 60 168 IPR011039 GO:0006367
Amo08g0148 301 MobiDBLite consensus disorder prediction 213 238 - -
Amo08g0148 301 CDD TFIIF_beta 62 167 - -
Amo08g0148 301 MobiDBLite consensus disorder prediction 33 53 - -
Amo08g0148 301 SUPERFAMILY "Winged helix" DNA-binding domain 234 292 IPR036390 -
Amo08g0148 301 MobiDBLite consensus disorder prediction 221 238 - -
Amo08g0148 301 MobiDBLite consensus disorder prediction 30 63 - -
Amo08g0148 301 Pfam TFIIF, beta subunit HTH domain 236 291 IPR040450 -
Amo08g0148 301 Pfam TFIIF, beta subunit N-terminus 69 188 IPR040504 -
Amo08g0148 301 PANTHER TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNIT 51 297 - -
Amo08g0148 301 Gene3D - 234 293 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0148 Amo-Chr8 2621372 2628289 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0148 K03139 - gmx:100788473 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0148 08 2621372 2628289 Amo17g2197 17 112829920 112833742 hybridization