Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2127 ATGAAGGGAAACAACAAGAGGCCTATATACGCCGTGACCACATGGGTTCGGCGCCAGCCCCCAAAAACGAAGGCCTTTCTCGCCCTTCTTTCCGCCATTGCCGCCCTTGTCTTCCTCAGGATGGTAGTCAACGACCACGACAACCTCTTCGTCGCCGCCGAGGCTGTTCATGCTCTGGGAATCTCCCTCCTCATCTACAAGCTCACCAAGGATAAAACTTGTGCTGGACTGTCACTGAAGTCGCAGGAACTGACGGCTTTGTTTCTAGCTGTTAGACTGTACTGCAGTTTTGTGATGGAATATGATATACACACAATTCTGGATCTGGCAACACTGGTAACCACCCTTTGGGTTATCTATATGATCCGCTTCAAACTCAAATCCACTTATATGGATGATAAGGATAATCTCGCGATATATTTGGTTGTGGCACCTTGTGCAGTGGTGTCCTTCTTTATCCATCCAACAACCCGGAATTCTATCGTTAACAGGATTCTCTGGGCCTTCTGTGTTTATCTTGAAGCCGTCTCTGTTCTACCACAGCTTCGGGTTATGCAGAATACTAAGATTGTTGAACCAATCACAGCACATTATGTTTTTGCACTTGGAGTAGCAAGGTTCTTGAGTTGTGCACATTGGGTCCTCCAGGTAATCGATACACGCGGACGCCTACTAGTTGTTTTGGGTTATGGATTGTGGCCTTCAATGGTGCTTATATCTGAAATTGTCCAAACTTTTATCCTAGCAGACTTTTGCTACTACTATGTCAAGAGCATTATTGGGGGACAACTTGTTGTTCGGCTTCCATCAGGAGTAGTTTAA 822 0.4599 MKGNNKRPIYAVTTWVRRQPPKTKAFLALLSAIAALVFLRMVVNDHDNLFVAAEAVHALGISLLIYKLTKDKTCAGLSLKSQELTALFLAVRLYCSFVMEYDIHTILDLATLVTTLWVIYMIRFKLKSTYMDDKDNLAIYLVVAPCAVVSFFIHPTTRNSIVNRILWAFCVYLEAVSVLPQLRVMQNTKIVEPITAHYVFALGVARFLSCAHWVLQVIDTRGRLLVVLGYGLWPSMVLISEIVQTFILADFCYYYVKSIIGGQLVVRLPSGVV* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2127 273 Pfam ER lumen protein retaining receptor 73 215 IPR000133 GO:0006621|GO:0016021|GO:0046923
Amo17g2127 273 PRINTS ER lumen protein retaining receptor signature 49 68 IPR000133 GO:0006621|GO:0016021|GO:0046923
Amo17g2127 273 PRINTS ER lumen protein retaining receptor signature 76 96 IPR000133 GO:0006621|GO:0016021|GO:0046923
Amo17g2127 273 PRINTS ER lumen protein retaining receptor signature 167 187 IPR000133 GO:0006621|GO:0016021|GO:0046923
Amo17g2127 273 PRINTS ER lumen protein retaining receptor signature 189 203 IPR000133 GO:0006621|GO:0016021|GO:0046923
Amo17g2127 273 PRINTS ER lumen protein retaining receptor signature 203 221 IPR000133 GO:0006621|GO:0016021|GO:0046923
Amo17g2127 273 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR 4 272 IPR000133 GO:0006621|GO:0016021|GO:0046923
Amo17g2127 273 PANTHER ER LUMEN PROTEIN RETAINING RECEPTOR-LIKE PROTEIN 4 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2127 Amo-Chr17 110165250 110167245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2127 6 273 Miscellaneous Gene Families AT2G21190 81.716 3.13e-169 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2127 - K10949 gmx:100787747 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2127 17 110165250 110167245 Amo17g2127 17 110165250 110167245 ECH
Amo08g0345 08 6768696 6771299 Amo17g2127 17 110165250 110167245 hybridization