Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g2114 ATGTCCTCTGATTCTGAATTCACAATTCACAATTCCCAATCCAACAATATTCCTTACTCCAATTCTTCATCATATCATCAAAACTCCAACCCTAGGGTGATCTCTTCTTCGCCGTGCTGCTTACAATCAGAATCAGCAATGCATCAAGGAGATTACACCTCCGCTCCATATTATCAATTCCCACACCTCCAAAACCCTAATCCCAACCCCTCCAATCTATACGCTTCCGCACCCCCCGTCACACCCGATTACACCCAATACGCCACCGCCACCACCACCACGTATTCCCCATACCCCCCAAACCCCGAGCCTCTTCCACCACCCTCCACCGCCGCACCCACCGCTCCTTCCTACCCTCCAACCTCCGTTAACCCTAACCTCCCCTCATTCAATTCCACCTTCGATTCTCACCCTTCGTACCATCAACCACCTTCGCAGAACCAGCCCTATTTCCCGCCCTATGATCAGCATCAAACCACTCCGAATTACGCCCCTCCTCCAATCTCCTCAATTCCCTCCGAGTCCAATCCCAGTTCCTCGTACTCCTCTTTGTACAATTCGGCACCGTACACTCACGCCGGAGCCTCCGTTCCTCCGGTTCCCTCATACGATAGCCCCTACCAGAATCCAGTGAAAGCCGATCACGGCGGTGCATATTTTGACGATTTCGGAGGCCTTAATCGGAGCCGTTCAGAATTGGGATCAGTTTCGAGCTACGATGAAGGCTATGGTGATGGTGTGTATGCTTATGAAGGGGGCAAGGTGGAGCCCTACGGTGCGCGTGGCACAGCTCCTAAATCTTCGACGTGGTCCTCAACCACGTTCGATGATTATGGAAGGTCCATCAGTTTTCCCTCTCAGAATGAATCTTCTTCTGTCTCAAGTAAGATCGTGAAAGCGGTGCCAAAAGCTGATGCCCAAGAAGATGGAAAAACTGGGGTGCAAAAGTTCAGGGTCAAGTTGCTGGCAGAAAGTGGTGGCCAGAGCGCTACAGATGTTCTATGCCAGATTGGTTTGGATGGAATCCGCATGCTAGATCCAGATACAAGTCGGACATTGAGAATATATCCACTTGAGAACATAACAGGATGTGATAGACTTGACTCAGCTACCTTTGCATTTTGGTCAAAGAGCCCAGTAGACATTGAACCAAGACGAATCAGATTGCAATCCAATAGCTACACTACAAACACACTTTTGGATACAGTGATTGCTGCAACCATACAGTTCAAGGAAATGAATGGAAGCAGCAGGAGGCCTCCTGAGCCATTGAAAGCAAATGAACAGCCTACAGAAAGAAAGAAAGGCTTTGGCGATTGGATGAATCTGATAAAGCCTGCCAATGAAGAGAAGGATCACTGGGTCCCAGATGAAGCAGTTTCAAAATGCAAAGATTGTCAGACTGATTTTGGGGCTTTTAATCGCAAGCATCATTGTAGGAACTGTGGTGATATTTTCTGTGACAAATGTACACAAGGTAGAATTGCTTTAACTGCCGATGCGAATGCTCAGCCAGTACGAGTTTGTGATCGATGCATGGCGGAAGTGACCCAAAGGCTGAGTAGTGCTAAAGAGTCATCAAGTAAACCCGTGTTACAGAGTCACGAGGATCTTGCCAGGAAGCTTCAGGAGGAGCTGCAGAGAAACCAAAAGACATCAGGTTCGACCTCTGGAGGATCTGGAAGACGGACAAGGGAAGTTGCATGTCCCATTTGCACTGTCTATCTGCAGGTTCAGGTGCCAAGCTCAGGTTCAGAAACCATTGAATGTGGAGTTTGCCAGCACCCATTTCTTGTGAGTGCGCATTGA 1809 0.4859 MSSDSEFTIHNSQSNNIPYSNSSSYHQNSNPRVISSSPCCLQSESAMHQGDYTSAPYYQFPHLQNPNPNPSNLYASAPPVTPDYTQYATATTTTYSPYPPNPEPLPPPSTAAPTAPSYPPTSVNPNLPSFNSTFDSHPSYHQPPSQNQPYFPPYDQHQTTPNYAPPPISSIPSESNPSSSYSSLYNSAPYTHAGASVPPVPSYDSPYQNPVKADHGGAYFDDFGGLNRSRSELGSVSSYDEGYGDGVYAYEGGKVEPYGARGTAPKSSTWSSTTFDDYGRSISFPSQNESSSVSSKIVKAVPKADAQEDGKTGVQKFRVKLLAESGGQSATDVLCQIGLDGIRMLDPDTSRTLRIYPLENITGCDRLDSATFAFWSKSPVDIEPRRIRLQSNSYTTNTLLDTVIAATIQFKEMNGSSRRPPEPLKANEQPTERKKGFGDWMNLIKPANEEKDHWVPDEAVSKCKDCQTDFGAFNRKHHCRNCGDIFCDKCTQGRIALTADANAQPVRVCDRCMAEVTQRLSSAKESSSKPVLQSHEDLARKLQEELQRNQKTSGSTSGGSGRRTREVACPICTVYLQVQVPSSGSETIECGVCQHPFLVSAH* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g2114 602 CDD PTB 318 374 - -
Amo17g2114 602 PANTHER PROTEIN FREE1 47 602 - -
Amo17g2114 602 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 522 IPR013083 -
Amo17g2114 602 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 457 517 IPR017455 -
Amo17g2114 602 SUPERFAMILY FYVE/PHD zinc finger 452 526 IPR011011 -
Amo17g2114 602 Coils Coil 532 552 - -
Amo17g2114 602 MobiDBLite consensus disorder prediction 1 37 - -
Amo17g2114 602 SMART fyve_4 449 518 IPR000306 GO:0046872
Amo17g2114 602 MobiDBLite consensus disorder prediction 412 432 - -
Amo17g2114 602 MobiDBLite consensus disorder prediction 58 182 - -
Amo17g2114 602 SUPERFAMILY PH domain-like 314 379 - -
Amo17g2114 602 MobiDBLite consensus disorder prediction 58 96 - -
Amo17g2114 602 MobiDBLite consensus disorder prediction 124 144 - -
Amo17g2114 602 PANTHER PROTEIN FREE1 47 602 IPR045893 GO:0036258|GO:0043130
Amo17g2114 602 Pfam FYVE zinc finger 453 517 IPR000306 GO:0046872
Amo17g2114 602 MobiDBLite consensus disorder prediction 97 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g2114 Amo-Chr17 109694498 109698660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g2114 435 518 EF-hand Containing Proteins AT3G14270 33.673 1.28e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g2114 - - ahf:112705657 1038.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g2114 17 109694498 109698660 Amo17g2114 17 109694498 109698660 ECH
Amo08g0206 08 3458890 3463120 Amo17g2114 17 109694498 109698660 hybridization