Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0206 ATGTCCTCTGATTCTGAATTCACAATTCACAATTCCCAATCCAACAATATTCCTTACTCCAATTCTMCATCATATCATCAAAACTWCAACCCTAGGGTGATCTCTRCTTCGCCGTGCTGCTTACAATCAGAATCAGCAATGCATCAAGGAGATTACACCTCCGCTCCATATTATCAATTCCCACACCTCCAAAACCCTAATCCCAACCCCTCCAATCTATACGCTTCCGCACCCCCCGTCACACCCGATTACACCCAATACGCCACCGCCACCACCACCACCACCACCACGTATTCCCCGTACCCCCCAAACCCCGAGCCTCTTCCACCACCCTCCACCGCCGCTCCCACCGCTCCTTCCTACCCTCCAACCTCCGTTAACCTCCCCTCATTCAATTCCACCTTCAATTCTCACCCTTCGTACCATCAACCACCTTCGCAGAACCAGCCCTATTTCCCGCCCTATGATCAGCATCAAACCACTCCGAATTACGCCCCTCCTCCAACCTCCTCAATTCCCTCTGAGTCCAATCCCAGTTCCTCGTACTCCTCTTTGTACAATTCGGCACCGTACACTCACGCCGGAGCTTCCGTTCCTCCGGTTCCCTCATACGATAGCCCTTACCAGAATCCAGTGAAAGCCGATCACGGCAGTGCATATTTTGACGATTTCGGAGGCCTTAATCGGAGCCGTTCAGAATTGGGATCAGTTTCGAGCTACGATGAAGGCTATGGTGATGGTGTGTATGCTTATGAAGGGGGCAAGGTGGAGCCCTACGGTGCGCGTGGCACAGCTCCTAAATCTTCGACGTGGTCCTCAACCACGTTCGATGATTATGGAAGGTCCATCAGTTTTCCCTCTCAGAATGAATCTTCTTCTGTCTCAAGTAAGATCGTGAAAGCGGTGCCAAAAGCTGATGCCCAAGAAGATGGAAAAACTGGGGTGCAAAAGTTCAGGGTCAAGTTGCTGGCAGAAAGTGGTGGCCAGAGCGCTACAGATGTTCTATGCCAGATTGGTTTGGATGGAATCCGCATGCTAGATCCAAATACAAGTCGGACATTGAGAATATATCCACTTGAGAACATAACAGGATGTGATAGACTTGACTCATCTACCTTTGCATTTTGGTCAAAGAGCCCAGTGGACATTGAACCAAGACGAATCAGATTGCAATCCAATAGCTACACTATAAACACACTTTTGGATACAGTGATTGCTGCAACCATACAGTTCAAGGAAATGAATGGAAGCAGCAGGAGGCCTCCTGAGGCATTGAAAGCAAATGAACAGCCTACAGAAAGAAAGAAAGGCTTTGGCGATTGGATGAATCTGATAAAGCCTGCCAATGAAGAGAAGGATCACTGGGTCCCAGATGAAGCAGTTTCAAAATGCAAAGATTGTCAGACTGATTTTGGGGCTTTTAATCGCAAGCATCATTGTAGGAACTGTGGTGATATTTTCTGTGACAAATGTACACAAGGTAGAATTGCTTTAACTGCCGATGCGAATGCTCAGCCAGTACGTGTTTGTGATAGATGCATGGCGGAAGTGACCCAAAGGCTGAGTAGTGCTAAAGAGTTATCAAGTAAACCTGTGTTACAGAGTCATGAGGATCTTGCCAGGAAGCTTCAGGAGGAGCTGCAGAGAAACCAAAAGACATCAGGTTCGACCTCTGGAGGATCTGGAAGACGGACAAGGGAAGTTGCATGTCCCATTTGCACTGTCCATCTGCAGGTTCAGGTGCCAAGCTCAGGTTCAGAAACCATTGAATGTGGAGTTTGCCAGCACCCATTTCTTGTGAGTGCGCATTGA 1812 0.4818 MSSDSEFTIHNSQSNNIPYSNSXSYHQNXNPRVISXSPCCLQSESAMHQGDYTSAPYYQFPHLQNPNPNPSNLYASAPPVTPDYTQYATATTTTTTTYSPYPPNPEPLPPPSTAAPTAPSYPPTSVNLPSFNSTFNSHPSYHQPPSQNQPYFPPYDQHQTTPNYAPPPTSSIPSESNPSSSYSSLYNSAPYTHAGASVPPVPSYDSPYQNPVKADHGSAYFDDFGGLNRSRSELGSVSSYDEGYGDGVYAYEGGKVEPYGARGTAPKSSTWSSTTFDDYGRSISFPSQNESSSVSSKIVKAVPKADAQEDGKTGVQKFRVKLLAESGGQSATDVLCQIGLDGIRMLDPNTSRTLRIYPLENITGCDRLDSSTFAFWSKSPVDIEPRRIRLQSNSYTINTLLDTVIAATIQFKEMNGSSRRPPEALKANEQPTERKKGFGDWMNLIKPANEEKDHWVPDEAVSKCKDCQTDFGAFNRKHHCRNCGDIFCDKCTQGRIALTADANAQPVRVCDRCMAEVTQRLSSAKELSSKPVLQSHEDLARKLQEELQRNQKTSGSTSGGSGRRTREVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSAH* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0206 603 SUPERFAMILY PH domain-like 315 380 - -
Amo08g0206 603 MobiDBLite consensus disorder prediction 174 191 - -
Amo08g0206 603 SUPERFAMILY FYVE/PHD zinc finger 453 529 IPR011011 -
Amo08g0206 603 MobiDBLite consensus disorder prediction 56 99 - -
Amo08g0206 603 CDD PTB 319 375 - -
Amo08g0206 603 MobiDBLite consensus disorder prediction 531 548 - -
Amo08g0206 603 MobiDBLite consensus disorder prediction 528 563 - -
Amo08g0206 603 MobiDBLite consensus disorder prediction 119 145 - -
Amo08g0206 603 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 523 IPR013083 -
Amo08g0206 603 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 458 518 IPR017455 -
Amo08g0206 603 Coils Coil 533 553 - -
Amo08g0206 603 MobiDBLite consensus disorder prediction 549 563 - -
Amo08g0206 603 MobiDBLite consensus disorder prediction 56 216 - -
Amo08g0206 603 PANTHER PROTEIN FREE1 47 603 IPR045893 GO:0036258|GO:0043130
Amo08g0206 603 MobiDBLite consensus disorder prediction 100 118 - -
Amo08g0206 603 PANTHER PROTEIN FREE1 47 603 - -
Amo08g0206 603 MobiDBLite consensus disorder prediction 1 34 - -
Amo08g0206 603 Pfam FYVE zinc finger 454 518 IPR000306 GO:0046872
Amo08g0206 603 SMART fyve_4 450 519 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0206 Amo-Chr8 3458890 3463120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0206 436 531 EF-hand Containing Proteins AT3G14270 33.043 2.92e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0206 - - ahf:112705657 1071.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0206 08 3458890 3463120 Amo17g2114 17 109694498 109698660 hybridization