Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1657 ATGGCAGCAGGGGGATTCGCCATTGATGCTTCGGCTAACGGATTCGATGGTAGGATCACATTCTCCGTTGTCATCACTTGTATTGTTGCTGCATCCGGTGGACTCATTTTTGGATATGACATTGGGATTTCGGGAGGTGTAACAACTATGAGYCCGTTTCTTGAAAAATTCTTTCCAGCAATACTTAGAAAAGCTGCTAGTGCGGAAACAAACGTATACTGCGTGTATGATAGTCAAGTATTGACATTGTTCACGTCCTCCCTCTACCTGGCGGGGCTGSTGTCGTCTCTTCTAGCTAGCCGAGTCACCACGGCATTGGGCCGGAGAAACACCATGATCTTGGGTGGTTGTATCTTCTTCGCCGGMGGGGTCATTAATGGTAGCGCTGAAAATATCGTCATGCTCATATTGGGTCGCATCTTGTTAGGCTTTGGAGTTGGTTTTACTAATCAAGCCACTCCAGTGTACCTGTCTGAAATTGCACCACCTAAATGGCGAGGTGCCTTCAACACAGGCTTCCAATTCTTCATCGGAGTCGGCGTGGTGGCCGCGAACCTTATAAACTACTTCACAGCAAACCACTCGTGGGGCTGGCGACTCTCTCTCGGCCTCGCCGCCGTCCCAGCCACCTTCATGACTGTCGGAGCATTCCTCATCCCCGACACCCCGAGCAGCTTAGTAGAACGTGGCAAAATAGACCAAGCACGACAAGCGTTACAGAAAGTAAGAGGCCACACAACAAATGTGGGACCCGAACTAGAAGAACTGATTCGGTTTTCGAAAACCGCCATGATGGATCAAGAGAGATTCGTAACCATATTTGAGAGGCAGTATAGGCCTCAGCTGGTTATGGCTTTTGCTGTGCCATTGTCTCAGCAACTTACTGGGATCAATATCGTTGCATTCTATGCGCCTAATTTGTTTCAGTCTGTGGGATTTGGTAACCGCTCCGCTTTGCTTTCAGCTGTTATATTGGGACTCGTCAACCTTGGTTCCATACTGGTGTCTGCTTCCATTGTTGACCGATTTGGTCGCAGATTCTTGTTCATTGCTGGTGGTATTCAAATGCTTCTCTGCATGACTGCAGTGGGTGTGGTGTTAGCACTAGTGAGTGGCGTTGAAGGCACAGAAAGCATTTCGAAGGGGAACACTATACTCATATTGGTGCTGCTCTGCTTCTACGCCGCAGGATTCGGTTGGTCATGGGGCCCCCTCTGCTGGCTGATTCCTAGTGAGATCTTCCCCTTAAAGATCAGGTCTCCTGGCCAAAGCATTGCCGTTGCAGTTCAGTTATTAACGGTCTTTATTTTATCCCAAACTTCAAACATTGGACATGAAAAATCACTTAGATGGATCAAAAGCGCCACCACAGTTCGAACAATCTTCAAAATCCACCACTGA 1401 0.4811 MAAGGFAIDASANGFDGRITFSVVITCIVAASGGLIFGYDIGISGGVTTMSPFLEKFFPAILRKAASAETNVYCVYDSQVLTLFTSSLYLAGLXSSLLASRVTTALGRRNTMILGGCIFFAGGVINGSAENIVMLILGRILLGFGVGFTNQATPVYLSEIAPPKWRGAFNTGFQFFIGVGVVAANLINYFTANHSWGWRLSLGLAAVPATFMTVGAFLIPDTPSSLVERGKIDQARQALQKVRGHTTNVGPELEELIRFSKTAMMDQERFVTIFERQYRPQLVMAFAVPLSQQLTGINIVAFYAPNLFQSVGFGNRSALLSAVILGLVNLGSILVSASIVDRFGRRFLFIAGGIQMLLCMTAVGVVLALVSGVEGTESISKGNTILILVLLCFYAAGFGWSWGPLCWLIPSEIFPLKIRSPGQSIAVAVQLLTVFILSQTSNIGHEKSLRWIKSATTVRTIFKIHH* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1657 466 Gene3D MFS general substrate transporter like domains 18 249 IPR036259 -
Amo17g1657 466 CDD MFS_STP 29 440 IPR044778 GO:0015145|GO:0015749
Amo17g1657 466 ProSiteProfiles Major facilitator superfamily (MFS) profile. 26 466 IPR020846 GO:0022857
Amo17g1657 466 ProSitePatterns Sugar transport proteins signature 2. 141 166 IPR005829 GO:0016021|GO:0022857|GO:0055085
Amo17g1657 466 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 3 440 IPR045262 GO:0015144
Amo17g1657 466 Pfam Sugar (and other) transporter 27 448 IPR005828 GO:0016021|GO:0022857|GO:0055085
Amo17g1657 466 Gene3D MFS general substrate transporter like domains 260 462 IPR036259 -
Amo17g1657 466 PANTHER SUGAR TRANSPORTER 3 440 - -
Amo17g1657 466 SUPERFAMILY MFS general substrate transporter 27 438 IPR036259 -
Amo17g1657 466 TIGRFAM SP: MFS transporter, sugar porter (SP) family 22 444 IPR003663 GO:0016020|GO:0022857|GO:0055085
Amo17g1657 466 PRINTS Sugar transporter signature 411 423 IPR003663 GO:0016020|GO:0022857|GO:0055085
Amo17g1657 466 PRINTS Sugar transporter signature 34 44 IPR003663 GO:0016020|GO:0022857|GO:0055085
Amo17g1657 466 PRINTS Sugar transporter signature 388 409 IPR003663 GO:0016020|GO:0022857|GO:0055085
Amo17g1657 466 PRINTS Sugar transporter signature 136 155 IPR003663 GO:0016020|GO:0022857|GO:0055085
Amo17g1657 466 PRINTS Sugar transporter signature 292 302 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1657 Amo-Chr17 70463628 70473513 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1657 50 440 Organic Solute Cotransporters AT1G34580 64.557 2.98e-176 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1657 K24193 - adu:107459105 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1657 17 70463628 70473513 Amo17g1657 17 70463628 70473513 ECH
Amo17g1657 17 70463628 70473513 Amo07g1707 07 48732268 48740233 hybridization