Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1498 ATGAGTGTGGATTTAAAGAAAACTACCTCTAATGGCCATGAGAAAATGTTAAGCTTAGAAGAGCAGCAGTCCCTGATAATGGAGGTCAGAAGGTTGATTGGACCACTGTCTGGTAAGGCATCTCTTTATTGTTCTGATGCATCCATTGCAAGGCATTTGAGGGCGCGGAATTGGAATGTCAAGAAGGCGGTTAAAATGTTGAAACAGACACTAAAATGGAGAGCAGAATACAAACCAGAAGAGATCCGATGGGAAGATGTTGCTCAGGAAGCGGATACTGGAAAGATCTACAGAACAGATTACGTTGACAAGCATGGGAGAACAGTCCTTGTCATGAGACCTAGCCGCCAGAACTCGAAGTCGATAAAAGGACAGGTTAAATATTTGGTATACTGCATGGAGAATGCTATTCTAAATCTTCCACCACATCAGGAACAGATGGTCTGGCTAATTGACTTCCAGGGTTTCAATTTGTCACATATATCAGTCAGGGTGACCCGTGAAACTGCACATATATTGCAAGATCAGTATCCTGAACGTCTGGGTCTTGCAATACTGTACAATCCACCTAAGTTCTTTGAACCATTCTTCACGATGGTAAAGCCCCTATTGGAGCCTAAGACTTACAATAAAGTGAAGTTTGTTTACGCTGATGATAACAATACCAAGAAGATCATGGAGGATTTATTTGATTTGGACCAACTTGAATCTGCATTTGGCGGGAAGAATGACACAGGGTTTGACATAAACAGGTATGCGGAGAGGATGAAAGAGGACGACAAGAAGATTCCCTCTTTCTGGACAGGGGAGAACTCTCTATCATCAGTTCCAGTTGCTCCTCCATCGTTAGATTCAATTAAGTTAGATTCTGATTCTGACCCATCTGACTACGAGAAGAGAGAATCTTCCCCTGACTTAGACCCTGACCCTAGAATGGACACCGAGATCGTTAACCATAATGATGAGAATGTCTTGGTTAATCAAGAGTATGGAAACGCCAGAGTTGATACGCATTAA 1017 0.4238 MSVDLKKTTSNGHEKMLSLEEQQSLIMEVRRLIGPLSGKASLYCSDASIARHLRARNWNVKKAVKMLKQTLKWRAEYKPEEIRWEDVAQEADTGKIYRTDYVDKHGRTVLVMRPSRQNSKSIKGQVKYLVYCMENAILNLPPHQEQMVWLIDFQGFNLSHISVRVTRETAHILQDQYPERLGLAILYNPPKFFEPFFTMVKPLLEPKTYNKVKFVYADDNNTKKIMEDLFDLDQLESAFGGKNDTGFDINRYAERMKEDDKKIPSFWTGENSLSSVPVAPPSLDSIKLDSDSDPSDYEKRESSPDLDPDPRMDTEIVNHNDENVLVNQEYGNARVDTH* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1498 338 Pfam CRAL/TRIO, N-terminal domain 45 68 IPR011074 -
Amo17g1498 338 SMART CRAL_TRIO_N_2 45 70 IPR011074 -
Amo17g1498 338 Gene3D - 3 270 IPR036865 -
Amo17g1498 338 MobiDBLite consensus disorder prediction 320 338 - -
Amo17g1498 338 PANTHER CRAL-TRIO LIPID BINDING DOMAIN, CRAL/TRIO DOMAIN-CONTAINING PROTEIN-RELATED 1 303 - -
Amo17g1498 338 CDD SEC14 92 242 IPR001251 -
Amo17g1498 338 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 84 247 IPR001251 -
Amo17g1498 338 PANTHER GH16843P 1 303 - -
Amo17g1498 338 SUPERFAMILY CRAL/TRIO N-terminal domain 20 86 IPR036273 -
Amo17g1498 338 SUPERFAMILY CRAL/TRIO domain 84 262 IPR036865 -
Amo17g1498 338 SMART sec14_4 90 244 IPR001251 -
Amo17g1498 338 Pfam CRAL/TRIO domain 94 241 IPR001251 -
Amo17g1498 338 MobiDBLite consensus disorder prediction 289 318 - -
Amo17g1498 338 MobiDBLite consensus disorder prediction 271 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1498 Amo-Chr17 53930907 53937856 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1498 - - gmx:100780151 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1498 17 53930907 53937856 Amo17g1498 17 53930907 53937856 ECH
Amo08g0774 08 13727346 13730214 Amo17g1498 17 53930907 53937856 hybridization
Amo17g1498 17 53930907 53937856 Amo08g0774 08 13727346 13730214 PCT
Amo17g1498 17 53930907 53937856 Amo17g1498 17 53930907 53937856 PCT
Amo08g0774 08 13727346 13730214 Amo17g1498 17 53930907 53937856 PCT