Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g1256 ATGAGTGGGACTAGTGATAGATCACCTATATACAGGCTGTATGGGGTAGTTGTTCATTTGGATATCATGAATGCTGCCTTTTCTGGTCACTACGTGTGCTATGTGAAGAATTTCCAAAATAAGTGGTTCAAGGTTGACGATAGTGTGGTGACAGCTGTTGAATTGGACAAAGTTTTGAAGGAGGGGGCGTACATGCTTTTTTATGCAAGGTGCTCACCGAGGGCCCCAAAATTAATCAGAAGCAGGATAGTATCCGATTCAAAAATCAAAGTCCATGGAAAAGCTTTTATAATGAAATCAAGACATGTACCTTCAGATTCTGGTGCCTCTGAACGCATGACTAGTAGGGATGGTGCTGCCACCTTAGACACCCTCTATTCAAAGTTTTACCACATAAGAAGGGTTTTGGAAGACGACATGAGTGATAATTCATCTCTTTTCAGCAGCAATTCAGATGAAGGTTCTTGCAGCACCGATAGCACCCATGATTCAACCAGTAATGAGGACTTTGCTGAGTATATTTTCCGTGATTCGGGGCGTGGTAACTTGTTGAGGAATCCTGATTCTGACCCTTACTCTTCAACATCATCTTCTCCCTCGAACTCTGGACATTTGCCACTTTCAGACATGGGCCCGCACGACTCAGTTTTACCAGATACAGCTGTGCTGCGGCCACCTCCCGCCAGTCCAAGAATACAGAAAGATGGTCTTTTGTACAGGGGCCGACCTCTGGATCTTGAAAGGAGAGAAGGTGCTTTTCTTTTCAATCCTGAGTATACATCTGTAGAGCATAGGAAATTAGATACAAGTAGGAGCAGCAGTAGTTTTAGGAAAACTGACACTAAGAATGTAGGATCTAACCAGTATAATTATGTGAACTTTGGTGTATCTTGTACAAAATCAAGGGAAAGAACAGACTGA 921 0.4289 MSGTSDRSPIYRLYGVVVHLDIMNAAFSGHYVCYVKNFQNKWFKVDDSVVTAVELDKVLKEGAYMLFYARCSPRAPKLIRSRIVSDSKIKVHGKAFIMKSRHVPSDSGASERMTSRDGAATLDTLYSKFYHIRRVLEDDMSDNSSLFSSNSDEGSCSTDSTHDSTSNEDFAEYIFRDSGRGNLLRNPDSDPYSSTSSSPSNSGHLPLSDMGPHDSVLPDTAVLRPPPASPRIQKDGLLYRGRPLDLERREGAFLFNPEYTSVEHRKLDTSRSSSSFRKTDTKNVGSNQYNYVNFGVSCTKSRERTD* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g1256 306 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 71 IPR028889 -
Amo17g1256 306 MobiDBLite consensus disorder prediction 142 164 - -
Amo17g1256 306 Gene3D Cysteine proteinases 1 76 - -
Amo17g1256 306 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 1 290 - -
Amo17g1256 306 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 290 - -
Amo17g1256 306 MobiDBLite consensus disorder prediction 187 205 - -
Amo17g1256 306 MobiDBLite consensus disorder prediction 142 236 - -
Amo17g1256 306 Pfam Ubiquitin carboxyl-terminal hydrolase 7 68 IPR001394 GO:0004843|GO:0016579
Amo17g1256 306 SUPERFAMILY Cysteine proteinases 4 74 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g1256 Amo-Chr17 37294522 37296692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g1256 1 88 Miscellaneous Gene Families AT2G24640 52.273 6.79e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g1256 K11855 - gmx:100815856 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1256 17 37294522 37296692 Amo17g1256 17 37294522 37296692 ECH
Amo17g1256 17 37294522 37296692 Amo07g1835 07 54780437 54787545 hybridization