Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo07g1835 ATGCGTGTTACCGTGGATCTAGGGTTTTCGCCGAGCCTGGTCCTCGTTCTGCTGGTTTGCTTCGTGTTTCCGGCGATCGGGTTAGTGGTCCGCCACAAATGGCGGCTTGCGGTGGCAAGGTCGGAGGAGGTCAGGAGGCTGCTCGTCCTCGCGGCGGAGGAGGCCGCCAGGGCCGAGAGCGAGGCCACTTACCAGTATTTTGACGGGGCCGACGTTTCGGRCCCCACTTCTGCCWCTCCGGCGAAGAGCAATCAGTGTGCCGTGTGCTTCTGCCCCACCACGACGCGCTGTTCACGTTGCAAAGCGGTTCACTATTGTTCTGGTAAGTGTCAAATCGTTCACTGGCGTCAAGGTCACAAAGATGAATGCCGTCCTCCCAGTAATATTTGCCAGACTAATGACCGGGTAAGTGATCTTGGCAAAAAGGTTGCAGCGCCACATGAAGTCCATGATGAGAAGTCTAAGATCGAGAGCATAGGGCATAAAACATCCCCTGAGGAACCTCTGTCATCCGAGGCTAGTTTGTCTCCTGAAAGCTCATTTAGAAAGGATGATAACAGAAGAGTTGAGTCTTTAGGTGAGGGAAATATTACGGACTCTGCATTTTCTGGATTCTCGGCTTCCAATACTAACAGTGAATCATCTGATGATTCCTCTGTATGTGAGAGCATATCAAATGAACATGAGAGAACGGAAGGACACATCTTTGTTGAACCCACCCTTGAAAATTCTGATTCCGTTGAAACTGAGAACGGGATCGGTGTTGCCTTTTCATTGTCACCTAAATTTGCTAGTTTGGTTGATGAAGCAGATGGTTTTTCTTCAATGTCAAAATTAAATAGAGTTAGACCTGGTTTTAATAAAGAAGAAAATAAGCACACAACAACTGGTAGCTTGGGTTTGAATATGGGGAAGGGGCCAACAATTGAGTCTCCTACAGTGTCATCCAGTTTTTGGGATAAAACACTTGATTCGAAGGTTATCAAAGATGATGATAACAGTGGCCCCCAACCTCGCCACTTTGAAGATGCTCCTCCAAATTCTTCTAGGAAGGAAACATCATGTACTGGATTGGCATCTTCAGAGAATGAAGGTTTTTCACGGGATTCAAGCATCCAAAAGTTGCAATCTGTTGGCTCCAAGGTGTCAAATCATGTTGTGAACAACCCTGATAGCACCTTGAAGTCAGCTGAAATTAAATATCTTCCACATGCATTGGATGGTACTACATTGGTCTCTAAAGCCAAAGAGCATTCACAGTATGATATGAAATCTCGAAGTAATGGCATTCAATCTGGTACTGCAACTTCAACTCAGAGTGTTAGCGATTCTCTGAATTCTGAGAGTGGGACAAAAATCTCTAGTCTAAAAGTTGTTGATCAGTTTAAAGGAGCAAATTTGACACAAAACTTATCATTGGCTGTTGGGAGTGATATTGCTAGAAGATATAGTGACCAGGTTCTATTTCCATATGATTTATTTGTTAAGCTTTATAACTGGAACAGAGTGGAGTTACAACCATTTGGTCTTATAAATTGTGGAAACAGTTGTTATGCTAATGCTGTACTCCAGTGCTTAGCATTTACGCCACCGCTAACTGCTTACTTGCTTCAAGGACTTCATTCTAAATCATGTGCAAATAAAAAACTGTGTTTTGCCTGTGAACTTGAAAGTTTGATTCTCAAATCCAAGGAAACAAAATCTGCACTATCACCTGTGGGCATACTGTCTAAACTACAAAGTATTGGAAGTCAACTTGGTAATGGAAAGGAAGAAGATGCACATGAATTCCTAAGGTATGCTATTGAGGCAATGCAATCTGTTTTCCTTATGGAATCAGAGTTTAATGCAGACTCATTAAAAGAGGAGACAAATTTAATGGGCCTAACGTTCGGAGGCTACCTTCGATCAAAGATACAATGCATGGAATGTGGAGGGAAATCTGAGCGTCATGAAAGGATGATGGATCTGACTGTTGAGATAGGCGGGGATATAGCATCCTTGGAGGAGGCTCTTCGCCGTTTTACAAGCACTGAAACTCTAGATGGAGAGAACAAGTACAACTGTGTCAGATGTAAATCTTATGAGAAGGCCAAGAAGAAATTGACAGTTTCAGAAGCACCTAATGTTCTCACAATTGTATTAAAGAGATTTCAGTCTGGAAAATTTGGGAAGCTCAATAAGCCTATTCAGTTTCCTGAAATACTCAACTTTGCACCTTTCATGAGTGGGACTAGTGATAGATCACCTATATACAGGCTGTACGGGGTAGTTGTTCATTTGGATATCATGAATGCTGCCTTTTCTGGTCACTATGTGTGCTATGTGAAGAATTTCCAAAATAAGTGGTTCAAGGTTGACGATAGTGTGGTGACAGCTGTTGAATTGGACAAAGTCTTGAAGGAGGGGGCTTACATGCTTTTTTATGCAAGGTGCTCACCGAGGGCCCCAAAATTAATCAGAAGCAGGATAGTATCCGATTCAAAAAACAAAGTCCATGGAAAAGCTTTTATAATGAAATCAAGACATGTACCTTCTGATTCTGGTGCCTCTGAACGCATGACTAGTAGGGATGGTGCTGCCAAGTTAGACACCCTCTATTCAAAGTTTTACCACATAAGAAGGGTTTTGGAAGACGACATGAGTGATAATTCATCTCTTTTCAGCAACAATTCAGATGAAGGTTCTTGCAGTACCGATAGCACCCACGATTCAACCAGTAATGAGGATTTTGCTGAGTATATTTTCCGTGATTCGGGGCGTGGTAACTCGTTGAGGAATCCTGATTCTGACCCGTACTCTTCAACATCATCTTCTCCCTCGAACTCTGGACATTTGCCACTTTCAGACATGGGCCCGTACGACTCAGTTTTACCAGATACAGCTGTGCTGCGGCCACCTCCAGCCAGTCCAAGAATACAGAAAGATGGTCTTTTGTACAGGGGCCAACCTCTGGATCTTGAAAGGAGAGGAGAAGGTGCTTTTCTTTTGAATCCTGAGTATACATCTGTAGAGCATAGGAAATTAGATACAAGTAGGAGCAGCAGTAGTTTTAGGAAAACTGACACTAAGAATGTAGGATCTGACCAGTATAATTATGTGAACTTTGGTGTATCTTGTACAAAATCAAGGGAAAGAACAGACTGA 3147 0.4299 MRVTVDLGFSPSLVLVLLVCFVFPAIGLVVRHKWRLAVARSEEVRRLLVLAAEEAARAESEATYQYFDGADVSXPTSAXPAKSNQCAVCFCPTTTRCSRCKAVHYCSGKCQIVHWRQGHKDECRPPSNICQTNDRVSDLGKKVAAPHEVHDEKSKIESIGHKTSPEEPLSSEASLSPESSFRKDDNRRVESLGEGNITDSAFSGFSASNTNSESSDDSSVCESISNEHERTEGHIFVEPTLENSDSVETENGIGVAFSLSPKFASLVDEADGFSSMSKLNRVRPGFNKEENKHTTTGSLGLNMGKGPTIESPTVSSSFWDKTLDSKVIKDDDNSGPQPRHFEDAPPNSSRKETSCTGLASSENEGFSRDSSIQKLQSVGSKVSNHVVNNPDSTLKSAEIKYLPHALDGTTLVSKAKEHSQYDMKSRSNGIQSGTATSTQSVSDSLNSESGTKISSLKVVDQFKGANLTQNLSLAVGSDIARRYSDQVLFPYDLFVKLYNWNRVELQPFGLINCGNSCYANAVLQCLAFTPPLTAYLLQGLHSKSCANKKLCFACELESLILKSKETKSALSPVGILSKLQSIGSQLGNGKEEDAHEFLRYAIEAMQSVFLMESEFNADSLKEETNLMGLTFGGYLRSKIQCMECGGKSERHERMMDLTVEIGGDIASLEEALRRFTSTETLDGENKYNCVRCKSYEKAKKKLTVSEAPNVLTIVLKRFQSGKFGKLNKPIQFPEILNFAPFMSGTSDRSPIYRLYGVVVHLDIMNAAFSGHYVCYVKNFQNKWFKVDDSVVTAVELDKVLKEGAYMLFYARCSPRAPKLIRSRIVSDSKNKVHGKAFIMKSRHVPSDSGASERMTSRDGAAKLDTLYSKFYHIRRVLEDDMSDNSSLFSNNSDEGSCSTDSTHDSTSNEDFAEYIFRDSGRGNSLRNPDSDPYSSTSSSPSNSGHLPLSDMGPYDSVLPDTAVLRPPPASPRIQKDGLLYRGQPLDLERRGEGAFLLNPEYTSVEHRKLDTSRSSSSFRKTDTKNVGSDQYNYVNFGVSCTKSRERTD* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo07g1835 1048 Gene3D - 74 127 - -
Amo07g1835 1048 ProSiteProfiles Zinc finger MYND-type profile. 86 123 IPR002893 -
Amo07g1835 1048 MobiDBLite consensus disorder prediction 196 221 - -
Amo07g1835 1048 MobiDBLite consensus disorder prediction 424 446 - -
Amo07g1835 1048 MobiDBLite consensus disorder prediction 882 905 - -
Amo07g1835 1048 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 20 1031 - -
Amo07g1835 1048 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 509 524 IPR018200 GO:0004843|GO:0006511
Amo07g1835 1048 SUPERFAMILY Cysteine proteinases 504 815 IPR038765 -
Amo07g1835 1048 MobiDBLite consensus disorder prediction 882 977 - -
Amo07g1835 1048 MobiDBLite consensus disorder prediction 178 192 - -
Amo07g1835 1048 Pfam MYND finger 86 123 IPR002893 -
Amo07g1835 1048 Coils Coil 41 61 - -
Amo07g1835 1048 MobiDBLite consensus disorder prediction 323 338 - -
Amo07g1835 1048 ProSitePatterns Zinc finger MYND-type signature. 86 123 IPR002893 -
Amo07g1835 1048 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 1031 - -
Amo07g1835 1048 MobiDBLite consensus disorder prediction 417 446 - -
Amo07g1835 1048 MobiDBLite consensus disorder prediction 348 372 - -
Amo07g1835 1048 MobiDBLite consensus disorder prediction 291 322 - -
Amo07g1835 1048 MobiDBLite consensus disorder prediction 284 372 - -
Amo07g1835 1048 SUPERFAMILY HIT/MYND zinc finger-like 82 127 - -
Amo07g1835 1048 MobiDBLite consensus disorder prediction 923 946 - -
Amo07g1835 1048 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 508 812 IPR028889 -
Amo07g1835 1048 Pfam Ubiquitin carboxyl-terminal hydrolase 508 809 IPR001394 GO:0004843|GO:0016579
Amo07g1835 1048 MobiDBLite consensus disorder prediction 141 162 - -
Amo07g1835 1048 Gene3D Cysteine proteinases 501 821 - -
Amo07g1835 1048 MobiDBLite consensus disorder prediction 141 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo07g1835 Amo-Chr7 54780437 54787545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo07g1835 486 829 Miscellaneous Gene Families AT4G31670 48.997 2.05e-119 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo07g1835 K11855 - gmx:100782303 1176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g1256 17 37294522 37296692 Amo07g1835 07 54780437 54787545 hybridization