Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo17g0625 ATGGAACAACTGAAGCCAAGTGCTGCAAACTCTTCACCTCTCACTCCACTAGGTTTCTTGGACAGAGCAGCAACTGTTTACGGTGACATACCTTCCGTTATCTATGACGGCGTTACCTTCACCTGGTCCGACACTCGCCGTCGCTGCCTCCAGCTGGCCTCTGCTCTCTCCTCCCTAGGAATCCGCCGCGGCGACGTGGTCTCCGTCGTCGCACCAAACATACCCGCCATGTACGAGCTCCACTTTGCAGTCCCCTTCGCCGGCGCTATCCTCAACAACATCAACACACGCCTCGATGCCAGAACCATCTCCGTCATCCTCCGTCACGCGGAGTCCAAGCTCGTCTTTGTGGACACAGCCTCACGTGATGTTGTCCTCGAAGCTCTCTCTTTGTTCCCCGAAAATAATCCCCGTCGTCCGATCCTCATCTTTATAGCGGACGATGCGGTCGAGCGACTAACTCCATCATCAACCGTTCATTTCAAAGACTCGTATGAAGGTTTAATCTCCAAGGGCGATCCGAATTTTAAATGGTTATATCCTAACAGCGAGTGGGACCCGATGATACTTAACTACACCTCCGGAACGACGTCGTCTCCTAAAGGCGTAGTTCACTGCCACAGAGGAACCTTTGTTATGACCGTTGATTCGTTGATAGATTGGGCGGTTCCGAAACAACCCGTTTATCTCTGGACTCTACCGATGTTCCACGCTAACGGATGGAGCTTCCCGTGGGGGATGGCCGCCGTTGGAGGAACGAATATCTGCGTCCGCAAATTCGACGCGCGGATCGTGTTCTCCCTCATCACGCGCCACCGCGTGACTCACATGTGTGGCGCGCCGGTGGTGCTGAACATGCTCACAAACGCTCCCGACAACAAGCCGTTGGAGAATCCCGTTCACATCCTCACCGCCGGAGCGCCGCCTCCCTCGGCGGTGCTCCACCGCACGGAGTCTTTAGGATTCATAGTCAGCCACGGGTACGGCCTGACCGAGACTGGAGGACTTGTCGTGTCGTGCGCGTGGAAGAGAAAGTGGAACCATTTCCCGGCAGCGGAGAGGGCGAGGTTGAAGTCGCGTCAGGGAGTAAGAACATGCCTACTGACGGAAATGGACGTGGTGACACACGCGGGAGAGAGCGTGAAGCGTGACGGGGTAACGCTGGGTGAGGTAGTTATGCGCGGAAGCTGTGTGATGCTTGGATACCTTAAAGATCCCGAAGGAACAAGAAAATGTTTCAAAAATGGTTATTTCTACACCGGCGATGTTGGTGTGATGCATGAAGACGGTTACTTGGAGATAAAGGATAGGTCAAAGGACGTTATAATTAGCGGCGGCGAGAACTTGAGCAGCGTCGAGGTGGAATCGGTGCTTTATATGCACCCGGCGGTGAATGAGGCGGCGGTGGTGGCGAGGCCGGACGAGTACTGGGGGGAGACGCCGTGCGCGTTCGTGAGCGTGAAGGAGGGGAAGGCGGTGACGGAGAAGGAGATAATTGAGCATTGCAGGAAGAACATGCCAAAGTATATGGTTCCCAAAACGGTTGCGTTTAGGGAGGAGCTTCCAAAGACTTCCACCGGAAAGATTCAAAAGTTTGTTCTGAGACAAATTGCTCAAGAAATGGGTCCCATCAGACACAGCAAAATGTGA 1650 0.5418 MEQLKPSAANSSPLTPLGFLDRAATVYGDIPSVIYDGVTFTWSDTRRRCLQLASALSSLGIRRGDVVSVVAPNIPAMYELHFAVPFAGAILNNINTRLDARTISVILRHAESKLVFVDTASRDVVLEALSLFPENNPRRPILIFIADDAVERLTPSSTVHFKDSYEGLISKGDPNFKWLYPNSEWDPMILNYTSGTTSSPKGVVHCHRGTFVMTVDSLIDWAVPKQPVYLWTLPMFHANGWSFPWGMAAVGGTNICVRKFDARIVFSLITRHRVTHMCGAPVVLNMLTNAPDNKPLENPVHILTAGAPPPSAVLHRTESLGFIVSHGYGLTETGGLVVSCAWKRKWNHFPAAERARLKSRQGVRTCLLTEMDVVTHAGESVKRDGVTLGEVVMRGSCVMLGYLKDPEGTRKCFKNGYFYTGDVGVMHEDGYLEIKDRSKDVIISGGENLSSVEVESVLYMHPAVNEAAVVARPDEYWGETPCAFVSVKEGKAVTEKEIIEHCRKNMPKYMVPKTVAFREELPKTSTGKIQKFVLRQIAQEMGPIRHSKM* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo17g0625 549 SUPERFAMILY Acetyl-CoA synthetase-like 11 540 - -
Amo17g0625 549 Gene3D - 440 542 IPR045851 -
Amo17g0625 549 Pfam AMP-binding enzyme 21 444 IPR000873 -
Amo17g0625 549 Gene3D - 2 439 IPR042099 -
Amo17g0625 549 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
Amo17g0625 549 PANTHER LONG-CHAIN ACYL-COA SYNTHETASE 2 544 - -
Amo17g0625 549 CDD ttLC_FACS_AEE21_like 12 535 - -
Amo17g0625 549 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Amo17g0625 549 PANTHER ACYL-ACTIVATING ENZYME 2 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo17g0625 Amo-Chr17 13438174 13440366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo17g0625 1 541 EF-hand Containing Proteins AT1G21540 63.339 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo17g0625 - - adu:107489788 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo17g0625 17 13438174 13440366 Amo17g0625 17 13438174 13440366 ECH
Amo17g0625 17 13438174 13440366 Amo07g0919 07 16884060 16886044 hybridization