Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g4069 ATGCCACGACCCAGAAACATGCGACCCAATATCGTTTCTGAGGCTGGGGTTTCTACTAGGCTGAATCAATATTGGGAAAGCATTCCGTTCCTCACTTCTGCTATTGTGGTTCTTTGTGGAATTATTTACTTGGTTTGTTTATTGGTTGGATATGATTCATTTGCTGAGGTATGCTTTTTGCCGTCTGCTGTTGTATCACGTTTTCAAGTTTACAGGATTTATACCTCCATTCTTTTTCATGGTTCACTGCTTCATGTTCTCTTCAACATGATGGCCTTAGTTCCCATGGGATCTGAGATGGAGAGGGTCATGGGTTCAGTTCGCCTGCTATATGTCACGATTTTGTTGGCCACGAGCAATGCTATATTCCACATTCTCGTAGCACTGCTGGTGGCACACAATCCTATTCAATCGTCGGAATACTTCATGAATGAGTGTGCTATAGGCTTCTCGGGAGTTCTGTTTTCCATGATTGTTATAGAGACAAGCCTGAGTGGAGCTCAATCTCGGAGTGTTTTTGGCTTGTTTAACGTCCCGGCGAAATGGTATCCATTCCTTTTGCTAGTGGTGTTCCAGCTTCTCATGGAGAATGTCTCACTTCTTGGACACCTTTGTGGCATTATATCTGGGTTTGCATATACATATGGCTTGTTCAATATCCTAATACCTGGGACATCTTTTTATTCTTCCATTGAAGCTTCATCCTTGCTTTCATCGTGTGTGAGACGTCCTAAATTTATTGTTTGCACTGGTGGAAATACTTCGGGTTATATCCCTACACATACAAGCCGAAATTCAACTTCTGGTGGAATACTTTCTGGAAATGTTTGGAGAAACCTATCATCATTGATGCCGCAAAGAGAAGTGTCTGCACAGCCAACTGAGGACAGTAGGTTCCCTGGGAGGGGAAGGGCCCTTGGTTCTGGTCAAGGTCAAGCAGCTTCTGCTCTAAATTCAGATTCAAGTCTTCAAGCTAGACTCTTGGATAATAGCAGCCCTGATCAACCTTTAGAGTCATCTGCTCACAGCACTGCTCAACAGTTATCAGGAGGAAGGAATTCAGCTGGTAATGTAGCAACAGTGGCTGCTAATGTTCCACAGCATCAGGGTGCAGCTGCTTCAGAAGAGGAGATTAAGAAACTGGTATCAATGGGCTTTGACAGGACACAGGTGGAGGTAGCACTGGCAGCTGCTGATGGTGATCTTAATGTGGCAGTGGAAATACTAATGAGCCAGCAGGGTTAA 1245 0.4426 MPRPRNMRPNIVSEAGVSTRLNQYWESIPFLTSAIVVLCGIIYLVCLLVGYDSFAEVCFLPSAVVSRFQVYRIYTSILFHGSLLHVLFNMMALVPMGSEMERVMGSVRLLYVTILLATSNAIFHILVALLVAHNPIQSSEYFMNECAIGFSGVLFSMIVIETSLSGAQSRSVFGLFNVPAKWYPFLLLVVFQLLMENVSLLGHLCGIISGFAYTYGLFNILIPGTSFYSSIEASSLLSSCVRRPKFIVCTGGNTSGYIPTHTSRNSTSGGILSGNVWRNLSSLMPQREVSAQPTEDSRFPGRGRALGSGQGQAASALNSDSSLQARLLDNSSPDQPLESSAHSTAQQLSGGRNSAGNVATVAANVPQHQGAAASEEEIKKLVSMGFDRTQVEVALAAADGDLNVAVEILMSQQG* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g4069 414 PANTHER RHOMBOID-LIKE PROTEIN 15 10 413 - -
Amo16g4069 414 MobiDBLite consensus disorder prediction 327 354 - -
Amo16g4069 414 MobiDBLite consensus disorder prediction 286 315 - -
Amo16g4069 414 PANTHER DER1-LIKE PROTEIN, DERLIN 10 413 - -
Amo16g4069 414 Pfam UBA/TS-N domain 375 409 IPR015940 -
Amo16g4069 414 Gene3D - 338 414 - -
Amo16g4069 414 Pfam Rhomboid family 66 219 IPR022764 GO:0004252|GO:0016021
Amo16g4069 414 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 372 412 IPR015940 -
Amo16g4069 414 SUPERFAMILY UBA-like 369 412 IPR009060 GO:0005515
Amo16g4069 414 Gene3D - 22 219 IPR035952 -
Amo16g4069 414 CDD UBA_At3g58460_like 375 410 - -
Amo16g4069 414 SUPERFAMILY Rhomboid-like 26 219 IPR035952 -
Amo16g4069 414 SMART uba_6 374 411 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g4069 Amo-Chr16 153140689 153145557 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g4069 - - ahf:112695909 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4069 16 153140689 153145557 Amo16g4069 16 153140689 153145557 ECH
Amo16g4069 16 153140689 153145557 Amo06g0408 06 5512619 5517607 hybridization