Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0408 ATGCCACGACCCAGAAACATGCGTCCCAATATCGTTTCTGAGGCTGGGGTTTCTACTAGGTTGAATCAATATTGGGAAAGCATTCCGTTCCTCACTTCTGCTATTGTGGTTCTTTGTGGAATTATTTACTTGGTTTGTTTATTGGTTGGATATGATTCATTTGCTGAGGTATGCTTTTTGCCGTCTGCTGTTGTATCACGTTTTCAAGTTTACAGGATTTATACCTCCATTCTTTTTCATGGTTCGCTGCTTCATGTTCTCTTCAACATGATGGCCTTAGTTCCCATGGGATCTGAGATGGAGAGGGTCATGGGTTCAGTTCGCCTGCTATATGTCACGATTTTGTTGGCCACGAGCAATGCTATATTCCACATTCTCGTAGCACTGCTGGTGGCACACAATCCTATTCAATCGTCAGAATACTTCATGAATGAGTGTGCTATAGGCTTCTCGGGAGTTCTGTTTTCCATGATTGTTATAGAGACAAGCCTGAGTGGAGCTCAATCTCGGAGTGTTTTTGGCTTGTTTAACGTCCCGGCAAAATGGTATCCATTCCTTTTGCTAGTGGTGTTCCAGCTTCTCATGGAGAATGTCTCACTTCTTGGACACCTTTGTGGCATTATATCTGGGTTTGCATATACATATGGCTTGTTCAATATCCTAATACCTGGGACATCTTTTTATTCTTCCATTGAAGCTTCATCCTTGCTTTCATCGTGTGTGAGACGTCCTAAATTTATTGTTTGCACTGGTGGAAATACTTCGGGTTATATACCTACACATACAAGCCGAAATTCAACTTCTGGTGGAATACTTTCTGGAAATGTTTGGAGAAACCTATCATCATTGATGCCGCAAAGAGAAGTGTCTGCCACACAGCCAACTGAGGACAGTAGGTTCCCTGGGAGGGGAAGGACCCTTGGTTCTGGTCAAGGTCAAGCAGCTTCTGCTCTAAATTCAGATTCAAGTCTTCAAGCTAGACTCTTGGATAATAGCAGCCCTGATCAACCTTTAGACTCATCTGCTCACAGCACTGCTCAACAGTTATCAGGAGGAAGGAATTCAGCTGGTAATGTAGCAACAGTGGCTGCTAATGTTCCACAGCATCAGGGTGCAACAGCTTCAGAAGAGGAGATTAAGAAACTGGTGTCAATGGGCTTTGACAGGACACAGGTGGAGGTAGCACTGGCAGCTGCTGAAGGTGATCTTAATGTGGCAGTGGAAATACTAATGAGCCAGCAGGGTTAA 1248 0.4399 MPRPRNMRPNIVSEAGVSTRLNQYWESIPFLTSAIVVLCGIIYLVCLLVGYDSFAEVCFLPSAVVSRFQVYRIYTSILFHGSLLHVLFNMMALVPMGSEMERVMGSVRLLYVTILLATSNAIFHILVALLVAHNPIQSSEYFMNECAIGFSGVLFSMIVIETSLSGAQSRSVFGLFNVPAKWYPFLLLVVFQLLMENVSLLGHLCGIISGFAYTYGLFNILIPGTSFYSSIEASSLLSSCVRRPKFIVCTGGNTSGYIPTHTSRNSTSGGILSGNVWRNLSSLMPQREVSATQPTEDSRFPGRGRTLGSGQGQAASALNSDSSLQARLLDNSSPDQPLDSSAHSTAQQLSGGRNSAGNVATVAANVPQHQGATASEEEIKKLVSMGFDRTQVEVALAAAEGDLNVAVEILMSQQG* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0408 415 Pfam UBA/TS-N domain 376 410 IPR015940 -
Amo06g0408 415 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 373 413 IPR015940 -
Amo06g0408 415 PANTHER RHOMBOID-LIKE PROTEIN 15 10 414 - -
Amo06g0408 415 MobiDBLite consensus disorder prediction 328 355 - -
Amo06g0408 415 SUPERFAMILY UBA-like 370 413 IPR009060 GO:0005515
Amo06g0408 415 CDD UBA_At3g58460_like 376 411 - -
Amo06g0408 415 Pfam Rhomboid family 66 219 IPR022764 GO:0004252|GO:0016021
Amo06g0408 415 MobiDBLite consensus disorder prediction 286 316 - -
Amo06g0408 415 SMART uba_6 375 412 IPR015940 -
Amo06g0408 415 SUPERFAMILY Rhomboid-like 26 219 IPR035952 -
Amo06g0408 415 PANTHER DER1-LIKE PROTEIN, DERLIN 10 414 - -
Amo06g0408 415 Gene3D - 341 415 - -
Amo06g0408 415 Gene3D - 22 219 IPR035952 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0408 Amo-Chr6 5512619 5517607 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0408 - - ahf:112695909 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g4069 16 153140689 153145557 Amo06g0408 06 5512619 5517607 hybridization