Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3732 ATGAAGTTTATGAAGTTGGGATCAAAGCCTGATGCCCTTAAAGCTGATGGAAAATCTGTCAGGTATGTGTCATCTGAATTGGCTACAGATATCACAATCACTGTAGGTGAAGTTAAGTTTTGCCTTCACAAGTTCCCTCTACTGTCCAAGAGCAATCGATTACAGAAGTTGGTATCGAAGGTTGATGAAGAGAATTCTGATGAAATATACTTGGATGACTTCCCTGGAGGACCGAAGGCCTTCGAAGTTTGCGCAAAATTCTGCTATGGAATGACAGTTACTCTAAATCCTTATAATGTAGTGGCTGCTCGTTGTGCTGCGGAGTTCCTTGAGATGACTGAAGATATCGATAAAGGAAACTTGATTTTCAAGATTGAGGTGTTTTTGAACTCTAGTATCTTTCGTAGCTGGAAAGATTCGATAATTGTTCTCCAAACAACAAAGGCTCTTCTTCCATGGTCTGAGGATCTGAAGATCATTGGGAGATGCATTGATTCCATTGCTTCAAAGACTTCAGTGGACCCAGGCAACATCACTTGGTCTTACACTTATAACCGGAAATTAACAGAACCTGATAATATTGTGGAGGAGACATCCCAAGAGAAAGTTAAGCATGTTCCAAGGGATTGGTGGGTTGAAGATATATGTGAATTGGACATTGATCTTTATAGAAGAGTGATGATTACAGTGAAATCAAAGGGAAGAATGGATGGTGTTGTGATTGGGGAGGCACTAAAAATCTATGCTATAAGATGGTTACCCGATTCTGTAGATGAATTGGTGTCTGGTGCCCACGCCCAGAGGTACAAAACCTTGGTAGAAACCATTGTGTGTCTGCTGCCGAGTGATAATGGCGTTGGTTGTTCATGTAGCTTCTTGCTCAAGTTATTGAAAGTGGCAATACTAGTTGAAGCTGATGAGTCATCGAGAGAAGAGTTGATGAAGAGCATCAGCCTGAAATTACATGAAGCTTCTGTGAAAGACTTGTTGATTCCAGCAAGGTCTCCTCAAAGTACTATGTTTGATGTTGATTTAGTACAAGGTCTTTTGAATCGATACATGAGTGAAGAAAAGGACGGCCTTAATTTCGAAGCCAATGAGAAGAAAGATAAAGTAAATGATGAATCTCTTTTGAGGAGTATGTCCTTGTTGAATGTTGGCAAGTTGGTTGATGGTTATATCAGAGAAATTTCGCACGATCCGAATCTCAGCCTCACTAGTTTTATTGCTTTGTCTCAGTCAATTCCAAAGTCTGCTAGGCCAAATCATGATGGTTTGTACAGAGCTATTGACATCTACTTGAAGGAGCACCCTGGCCTGACAAAAGCTGAAAAAAGGAACATATGTGGACTCATGGATGTCAAAAAATTAACCATTGATGCGTCGACGCACGCCGCTCAAAATGATCGTCTTCCTCTCCGGGTTATAGTGCAGGTTCTCTATTTTGAGCAGGTCAAAGCTTCTGCCATCCCTCAATCCATTAATAACATTCCACACGGCCCTTCAAATGCCGACTCAAATGGAGACGATGAATGCAAACAAACTGAGGGTGAGAGCTGTCAATACCTTGACAACGAAGTATGTCACTTGAAAGAAGGAGAATTGTGCAAGAATGGAAAGTTGAACAAGAAGAATAGCAAGAACAGCCGGAGTGGCACGCAGTTGTTGCCTTCTCGGTCGAGGAGGATCTTCGATAAGTTGTGGAATGTGGGAAAAGGGCAGGCAGAGAATAGGAGTTCAGAGACTTCAGGGAGTTCTAATAGCCCAGCTTCAATAGTTCCTGGGGACACCAAGTCTTCTGGTTCATCTTTAAGACATCGGAGGCATTCTATATCTTAG 1839 0.4187 MKFMKLGSKPDALKADGKSVRYVSSELATDITITVGEVKFCLHKFPLLSKSNRLQKLVSKVDEENSDEIYLDDFPGGPKAFEVCAKFCYGMTVTLNPYNVVAARCAAEFLEMTEDIDKGNLIFKIEVFLNSSIFRSWKDSIIVLQTTKALLPWSEDLKIIGRCIDSIASKTSVDPGNITWSYTYNRKLTEPDNIVEETSQEKVKHVPRDWWVEDICELDIDLYRRVMITVKSKGRMDGVVIGEALKIYAIRWLPDSVDELVSGAHAQRYKTLVETIVCLLPSDNGVGCSCSFLLKLLKVAILVEADESSREELMKSISLKLHEASVKDLLIPARSPQSTMFDVDLVQGLLNRYMSEEKDGLNFEANEKKDKVNDESLLRSMSLLNVGKLVDGYIREISHDPNLSLTSFIALSQSIPKSARPNHDGLYRAIDIYLKEHPGLTKAEKRNICGLMDVKKLTIDASTHAAQNDRLPLRVIVQVLYFEQVKASAIPQSINNIPHGPSNADSNGDDECKQTEGESCQYLDNEVCHLKEGELCKNGKLNKKNSKNSRSGTQLLPSRSRRIFDKLWNVGKGQAENRSSETSGSSNSPASIVPGDTKSSGSSLRHRRHSIS* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3732 612 MobiDBLite consensus disorder prediction 539 558 - -
Amo16g3732 612 MobiDBLite consensus disorder prediction 573 600 - -
Amo16g3732 612 Pfam NPH3 family 209 462 IPR027356 -
Amo16g3732 612 Gene3D Potassium Channel Kv1.1; Chain A 13 119 IPR011333 -
Amo16g3732 612 CDD BTB_POZ_NPY3-like 20 124 - -
Amo16g3732 612 Pfam BTB/POZ domain 25 117 IPR000210 GO:0005515
Amo16g3732 612 ProSiteProfiles BTB domain profile. 29 97 IPR000210 GO:0005515
Amo16g3732 612 MobiDBLite consensus disorder prediction 569 612 - -
Amo16g3732 612 PANTHER OS12G0117600 PROTEIN 4 600 IPR043454 -
Amo16g3732 612 MobiDBLite consensus disorder prediction 493 515 - -
Amo16g3732 612 SMART BTB_4 29 127 IPR000210 GO:0005515
Amo16g3732 612 ProSiteProfiles NPH3 domain profile. 209 486 IPR027356 -
Amo16g3732 612 SUPERFAMILY POZ domain 21 115 IPR011333 -
Amo16g3732 612 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY1 4 600 IPR029961 GO:0060918|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3732 Amo-Chr16 148686671 148692325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3732 22 485 EF-hand Containing Proteins AT3G44820 34.077 7.59e-93 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3732 - - gmx:100809437 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3732 16 148686671 148692325 Amo16g3732 16 148686671 148692325 ECH
Amo16g3732 16 148686671 148692325 Amo10g2260 10 79372924 79376407 PCT
Amo16g3732 16 148686671 148692325 Amo20g2703 20 124771998 124775618 PCT
Amo10g2260 10 79372924 79376407 Amo16g3732 16 148686671 148692325 PCT
Amo20g2703 20 124771998 124775618 Amo16g3732 16 148686671 148692325 PCT