Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g2260 ATGCATTCCACCTTCCTCGTCCACAAACCAACAACCACATTCAATTGGCAAATTGGCAATGCTACCCCAACACGCCACGCAACAATACTCCTTGTCTCCCCATTCTTGAAAAATATGAAGTTTATGAAGTTGGGTTCCAAGCCTGATTCCCTTGAAGCTCGTGGACACTCTACCAGATATGTATCATCTGAATTGGCCACTGATGTTACCATTAATGTCGGTGAAGTTAAGTTTTACCTTCATAAGTTTCCTCTATTGTCGAAGAGCAAGCGATTACAGAAGTTGATGTCGAAAGCTAGTGAAGAGGATTCTGATGATATTTACTTAGATGATTTCCCAGGAGGACCTAAGGCCTTTGAAATATGTGCAAAATTCTGTTATGAAATGACGGTTACTCTTAATGCTTACAATGTTGTAGCTGCTCGCTGTGCGGCCGAATATCTTGAGATGACTGAGGATATTGATCTGGGGAACTTAGTTTTTAAAATTGAAGTGTTCCTTAACTCAGGAATCTTCTGTTGCTGGAAGGATTCTATAATAGTCCTCCAAACTTGTAATTCTTTTCTGCCATGGTCTGAGGATCTGGAGATCATTGAGAGATGCATAGGTTCCATAACTTCTAAAATTGCTGTTGATCCGGCGAGCGTGTTCTGGTCTTACACTTATAATAGGAAATTAACAGAGAGAAAAAAACTTGTTGAGCACAAGATGATGTTTCTAGATCACATTGAATCTGTTCCTAAGGATTGGTGGGTTGAAGATATATGTGAACTGGACATTGATCTTTACAAAAGAGTAATGATTTGTGTGAAATCAAATGGAAGAACCGATAGCATTGTGATTGCAGAGGCACTAAAAGTGTATGCAATGAGATGGTTACCTGATTCCATTGATGCATTGACTTGGGAAGAGCATGCATCAAGAAACAAGTCTCTGGTAGAAACAGTTATCTGTTTATTGCCATGTGATAATGGCATTGGTTGCTCTTGTAGTTTTTTACTGAAGCTTCTGAAATTTGCCATATTAGTTGGAGCAAATGAGTCAGCAAGAGAAGAACTGATGAAGAAAATTAGCTCGAAATTGCATGAAGCTTGTGTCAAGGATTTGCTGATTCCAGCAAAGTCTCCTCAGATAACAACTTATGATGTTGATTTGGTACAAGGCCTTTTGAATCAATACTTGATTCACGAACAGGGAAGATGCAATATGGAGGTTATTGAGGAGAAAGATAATGGAAAAGATCTTTATATTTCGAGTGATAAATCCATATTGAACATTGGAAAGTTGGTCGACGGTTACCTCGGAGAAATTGCCCATGAGCCTAATCTCGGTCTCTCTAGTTTCGTCAATCTGTCGCAATCAGTTCCTGATTGTGCTAGGTCAAGTCACGATGGTCTATACAGAGCTATTGACATTTATTTGAAGAAGCATCCGGATTTGACAAAAGCAGAAAGGAAGAAGCTATGTAGACTCATGGATGTGAAGAAACTGACGGCGAATGCTTCAATGCATGCTGCGCAGAATGACCGGCTTCCTCTTCGAGTGATAGTGCAGGTTCTGTTTTTTGAGCAGGTTAGAGCCACAGCCAGAATTCAAGCAATACATGATCCTTTGCGGGTTGGAGGAGGTGAGAAGAGAGGGATTAATAGATGCCAGTCCCTCAAGGTGCCGATGATGAAAGAGGAAGGCAAGCTGAGTAAGAAGAACAGCAAAAACAGCCGAAGCGGCATGCAGTTGCTGCGGTCTGGGTCAAGGAGAATCATTGATAAGTTATGGATTGTGGGAAAAGGACAGCAAGAGAATAATAGGAGCTCTGAGACTTCAGGGAGTTTAGAGAATAATAGCCCAACTATGTCATCTGCTTTGAGACACCAGAGGCATTCTATCTCTTAG 1893 0.4089 MHSTFLVHKPTTTFNWQIGNATPTRHATILLVSPFLKNMKFMKLGSKPDSLEARGHSTRYVSSELATDVTINVGEVKFYLHKFPLLSKSKRLQKLMSKASEEDSDDIYLDDFPGGPKAFEICAKFCYEMTVTLNAYNVVAARCAAEYLEMTEDIDLGNLVFKIEVFLNSGIFCCWKDSIIVLQTCNSFLPWSEDLEIIERCIGSITSKIAVDPASVFWSYTYNRKLTERKKLVEHKMMFLDHIESVPKDWWVEDICELDIDLYKRVMICVKSNGRTDSIVIAEALKVYAMRWLPDSIDALTWEEHASRNKSLVETVICLLPCDNGIGCSCSFLLKLLKFAILVGANESAREELMKKISSKLHEACVKDLLIPAKSPQITTYDVDLVQGLLNQYLIHEQGRCNMEVIEEKDNGKDLYISSDKSILNIGKLVDGYLGEIAHEPNLGLSSFVNLSQSVPDCARSSHDGLYRAIDIYLKKHPDLTKAERKKLCRLMDVKKLTANASMHAAQNDRLPLRVIVQVLFFEQVRATARIQAIHDPLRVGGGEKRGINRCQSLKVPMMKEEGKLSKKNSKNSRSGMQLLRSGSRRIIDKLWIVGKGQQENNRSSETSGSLENNSPTMSSALRHQRHSIS* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g2260 630 CDD BTB_POZ_NPY3-like 59 162 - -
Amo10g2260 630 Pfam BTB/POZ domain 63 154 IPR000210 GO:0005515
Amo10g2260 630 PANTHER OS12G0117600 PROTEIN 43 623 IPR043454 -
Amo10g2260 630 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN NPY1 43 623 IPR029961 GO:0060918|GO:0099402
Amo10g2260 630 SMART BTB_4 67 165 IPR000210 GO:0005515
Amo10g2260 630 ProSiteProfiles BTB domain profile. 67 135 IPR000210 GO:0005515
Amo10g2260 630 ProSiteProfiles NPH3 domain profile. 249 526 IPR027356 -
Amo10g2260 630 SUPERFAMILY POZ domain 56 153 IPR011333 -
Amo10g2260 630 MobiDBLite consensus disorder prediction 598 630 - -
Amo10g2260 630 Gene3D Potassium Channel Kv1.1; Chain A 40 162 IPR011333 -
Amo10g2260 630 MobiDBLite consensus disorder prediction 561 580 - -
Amo10g2260 630 Pfam NPH3 family 249 502 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g2260 Amo-Chr10 79372924 79376407 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g2260 60 525 EF-hand Containing Proteins AT3G44820 32.929 1.65e-85 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g2260 - - aip:107620912 1169.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo10g2260 10 79372924 79376407 Amo20g2703 20 124771998 124775618 hybridization
Amo16g3732 16 148686671 148692325 Amo10g2260 10 79372924 79376407 PCT
Amo10g2260 10 79372924 79376407 Amo16g3732 16 148686671 148692325 PCT