Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3699 ATGACAACAAGCATGGTCACATTTTTCACAACCCTTTTGGTTATACTCATGAGTTTCCAAACTGAATCATTGCAACATCCAATTCCATCGCCATATTATTCAGGATCAGTTAAAGCTGGATATTGGCCTTCAGGTAATTCTCTCTCACCTTCTTCCATTGACACAAGATACTTCACACACATCTACTATGCCTTTGTAGAGCCAGAACCAAACACCTTCAACCTCATAATCACATCCTCCGACCAAAACTACATACCTCAATTCATCAATGGTTTAAGCAGCCGGAACCCTCCCGTCAAGACCATATTATCCATCGGAGGGGGTTCCAGCAATGCTACCTTATTCTCTTTGATGGCTAGCACGGTAAAAAACCGTGCAGCCTTCATAAACTCCACAATCCAAGTGGCCCGTCAATATGATTTTGACGGACTAGACTTGGATTGGGAGTTTCCTCAAAATGAGCAAGACATGGCAAACCTTGCTTTGTTGTTCAAAGAATGGCACCAGGCTGTGTCCAATATAAGCACCCAATTTGGTCTCGGATCTTGGATCCAGTCCGGCGTCCCGCCCTCAAAGCTGGTTTTCGGGTTACCGCTTTACGGGCGAGCGTGGAAGCTCCAAGATCCGAAAGTTCATGGGGACGGAGCGCCCGCAGTTGGAGCAGCCGATGGCACGGATGGTACTATGAATTATAATGATATCTTGGAATTTAATAAAAAGAATAAGGCTACAGTTGTGTTTGATAGGTCAGCTGTGTCTTATTACACTTATGCTGGCACTACTTGGATGAGCTATGATGATGCACCCTCCATGACAAGGAAGGATATTTCTTTTGGCAAGTTGGAGGCGATAAGAATTGGACTATGTCAAGACAAGCTTCAAGTACGTGGGGACACTGACGTTCTATACCAAATTCATATCGTGCTACATGAAAGAGAGCTTTAG 945 0.4444 MTTSMVTFFTTLLVILMSFQTESLQHPIPSPYYSGSVKAGYWPSGNSLSPSSIDTRYFTHIYYAFVEPEPNTFNLIITSSDQNYIPQFINGLSSRNPPVKTILSIGGGSSNATLFSLMASTVKNRAAFINSTIQVARQYDFDGLDLDWEFPQNEQDMANLALLFKEWHQAVSNISTQFGLGSWIQSGVPPSKLVFGLPLYGRAWKLQDPKVHGDGAPAVGAADGTDGTMNYNDILEFNKKNKATVVFDRSAVSYYTYAGTTWMSYDDAPSMTRKDISFGKLEAIRIGLCQDKLQVRGDTDVLYQIHIVLHEREL* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3699 314 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 141 149 IPR001579 GO:0004553|GO:0005975
Amo16g3699 314 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 36 314 IPR001223 GO:0005975
Amo16g3699 314 Pfam Glycosyl hydrolases family 18 174 274 IPR001223 GO:0005975
Amo16g3699 314 PANTHER CLASS V CHITINASE CHIT5A 25 172 - -
Amo16g3699 314 PANTHER CLASS V CHITINASE CHIT5A 172 281 - -
Amo16g3699 314 Gene3D - 199 265 IPR029070 -
Amo16g3699 314 Gene3D Glycosidases 35 179 - -
Amo16g3699 314 SUPERFAMILY (Trans)glycosidases 36 208 IPR017853 -
Amo16g3699 314 SUPERFAMILY Chitinase insertion domain 200 265 IPR029070 -
Amo16g3699 314 PANTHER CHITINASE 25 172 - -
Amo16g3699 314 PANTHER CHITINASE 172 281 - -
Amo16g3699 314 SMART 2g34 36 291 IPR011583 GO:0008061
Amo16g3699 314 Pfam Glycosyl hydrolases family 18 39 171 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3699 Amo-Chr16 148100542 148102035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3699 34 276 Glycoside Hydrolase AT4G19800 30.645 2.02e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3699 K01183 - zju:107420338 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3699 16 148100542 148102035 Amo16g3699 16 148100542 148102035 ECH
Amo16g3699 16 148100542 148102035 Amo06g2816 06 93373813 93374428 hybridization