Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3643 ATGTCTAAAGTCTTCGGCTTTTCCGGAGTTGATAATTTTTGCCCTGGTGGGTCAATATATACCTGTGGCAACCCCAAGGAAGCAAGTTTATTCCTTCCTCTTGGTCCACAAGTTGATGTTTACTTTCCACCTCGGAAGAGATCGCGGATCAGTGCTCCGTTTGTTTTCAATGGAGAATGGCTTGAACAGAAACAGAAGACATCTATTGAATCATTACCAGATGAGTGCCTCTTTGAGATCCTTAGGCGGTTGCCTGCAGGACAAGATAGGAGCGCCTGTGCTTGCGTTTCCAAGCGCTGGCTTATGTGTCTAAGCAATATTTGCAAGAACGAAATTTGCTGCAACAAAAGTGCTGCACCAGAGAGCAGCCTTAGTGTAAAAGAGGGGGATGATGAGGAATTTGGTGGCGAGGGATACCTCTCCCGGAGCTTGGAAGGAAAGAAGGCAACAGATATTAGACTTGCAGCAATTGCAGTTGGAACTGCATCTCGAGGAGGATTGGGGAAGCTTTCGATCCGTGGAAGCAATTCAGACTGTGTGGTGACCAATCTTGGTCTCAAAGCAGTTGGTCATGGATGCCCTTCTTTGAAGTCTCTTTCTCTCTGGAATATTGCTACAATTGATGATGAAGGCTTAATTGAGATTGCAAATGGATGTCAACAGCTGGAGAAGCTTGACCTTTGCAAGTGCCCAGCAATAACAGACAAGGGTTTGATTGCAGTTGTGAGGAAATGCCCAAATCTGACAGAGTTATCGTTGGAATCTTGTCCTAACATTGGTAATGAATGTCTAAGTGCTATTGGGAAAAGCTGCTCCAATCTGAAGTCCATAGCCATCAAGGACTGCAGTAGTGTTGGTGATCAGGGAATCGCTTGCTTGTTTTCTTCGACGACTTTGCTTCTGTCGAAGGTGAAACTACAAGCATTGACTATTTCCGATCTATCGCTTGCTGTTATTGGACATTATGGAAAGGCAGTTACGGATCTTGTCCTCAATTCCCTCCCAAATGTCAGCGAGAGGGGTTTCTGGGTTATGGGCAACGGTAATGGATTGCAGAAGCTGAAGTCACTTACAGTTGGGCCCTGCCTAGGACTAACAGATGTTGGTCTTGAAGCCGTGGGGAAGGGTTGCCCAAATCTGAAAGCCATCCACCTTCGCAAGTCTACACTTTTGTCAGACAATGGGTTGGTATCATTTGTGAAGGCCACTTCATCTCTAGAGAGCCTACAATTGGAAGAGTGCCACAGAATTTCCCAATTGGGTTTTCTTGGTGTTCTTTTCAACTGTGGTGCCATATTGAAGGCAATTTCTTTGACGAGCTGCTTTGGGTTCAAGGATCTGAATATGGTATTGCCCCCATCATCCCCTTGTGAATCTCTTCGGTCCTTATCAATCATTAACTGCCCTGGTTTTGGTAATGCTACCCTCTCTGTCCTGGGAAAGCAGTGTCCTCAGCTTCAACATGTTGAACTGAGTGGACTCGATGGTGTGAGAGATGCCGGGCTTCTCTCATTGCTCGAGAGCAATGAAGGTGGTCTGGTCAAAGTTAATCTCAGTGATTGCGTAAATCTGACTGACAAAGCTGTTTCATCATTGGTAAATCTGCATGGTTGGACTCTTGAGGTTCTAAACCTTGATGGTTGTAAGAATGTCAGTGATCCTAGCATGGTGGCAATTGCTAAAAATTGCCCATTGCTATGTGACCTTGATGTTTCCAAGTGCACGATCACTGATACTGGGATTGCAGCCCTGGCGGAAGCGAAGCAGTTCAATCTGCAGATTCTTTCTTTGTCAGGTTGCAGTTTGGTTTCAGATAGGAGCTTGCCATCTTTGAAAAAATTAGGCAGCACCCTTTTGGGACTAAACATCCAGCACTGCAACTCAATAAGCAGCAGCACAGTCGACATGCTTGTTGAACAACTCTGGAGGTGTGACATCCTCTCATGA 1947 0.4561 MSKVFGFSGVDNFCPGGSIYTCGNPKEASLFLPLGPQVDVYFPPRKRSRISAPFVFNGEWLEQKQKTSIESLPDECLFEILRRLPAGQDRSACACVSKRWLMCLSNICKNEICCNKSAAPESSLSVKEGDDEEFGGEGYLSRSLEGKKATDIRLAAIAVGTASRGGLGKLSIRGSNSDCVVTNLGLKAVGHGCPSLKSLSLWNIATIDDEGLIEIANGCQQLEKLDLCKCPAITDKGLIAVVRKCPNLTELSLESCPNIGNECLSAIGKSCSNLKSIAIKDCSSVGDQGIACLFSSTTLLLSKVKLQALTISDLSLAVIGHYGKAVTDLVLNSLPNVSERGFWVMGNGNGLQKLKSLTVGPCLGLTDVGLEAVGKGCPNLKAIHLRKSTLLSDNGLVSFVKATSSLESLQLEECHRISQLGFLGVLFNCGAILKAISLTSCFGFKDLNMVLPPSSPCESLRSLSIINCPGFGNATLSVLGKQCPQLQHVELSGLDGVRDAGLLSLLESNEGGLVKVNLSDCVNLTDKAVSSLVNLHGWTLEVLNLDGCKNVSDPSMVAIAKNCPLLCDLDVSKCTITDTGIAALAEAKQFNLQILSLSGCSLVSDRSLPSLKKLGSTLLGLNIQHCNSISSSTVDMLVEQLWRCDILS* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3643 648 PANTHER EIN3-BINDING F-BOX PROTEIN 1 19 639 - -
Amo16g3643 648 Gene3D Ribonuclease Inhibitor 449 648 IPR032675 -
Amo16g3643 648 Gene3D Ribonuclease Inhibitor 140 242 IPR032675 -
Amo16g3643 648 Gene3D Ribonuclease Inhibitor 243 448 IPR032675 -
Amo16g3643 648 SUPERFAMILY RNI-like 317 644 - -
Amo16g3643 648 PANTHER UNCHARACTERIZED 19 639 - -
Amo16g3643 648 Gene3D - 62 113 - -
Amo16g3643 648 SUPERFAMILY RNI-like 178 339 - -
Amo16g3643 648 SMART LRR_CC_2 457 482 IPR006553 -
Amo16g3643 648 SMART LRR_CC_2 563 587 IPR006553 -
Amo16g3643 648 SMART LRR_CC_2 377 402 IPR006553 -
Amo16g3643 648 SMART LRR_CC_2 403 428 IPR006553 -
Amo16g3643 648 SMART LRR_CC_2 537 562 IPR006553 -
Amo16g3643 648 SMART LRR_CC_2 483 508 IPR006553 -
Amo16g3643 648 SMART LRR_CC_2 271 296 IPR006553 -
Amo16g3643 648 SMART LRR_CC_2 193 218 IPR006553 -
Amo16g3643 648 SMART LRR_CC_2 589 614 IPR006553 -
Amo16g3643 648 SMART LRR_CC_2 510 535 IPR006553 -
Amo16g3643 648 SMART LRR_CC_2 351 376 IPR006553 -
Amo16g3643 648 SMART LRR_CC_2 219 244 IPR006553 -
Amo16g3643 648 SMART LRR_CC_2 245 270 IPR006553 -
Amo16g3643 648 SMART fbox_2 72 113 IPR001810 GO:0005515
Amo16g3643 648 Pfam F-box domain 70 108 IPR001810 GO:0005515
Amo16g3643 648 SUPERFAMILY F-box domain 64 105 IPR036047 GO:0005515
Amo16g3643 648 Pfam Leucine Rich repeat 244 267 IPR001611 GO:0005515
Amo16g3643 648 Pfam Leucine Rich repeat 568 585 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3643 Amo-Chr16 147162854 147166643 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3643 K14515 - gmx:100819226 1023.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3643 16 147162854 147166643 Amo06g2856 06 94048870 94052671 hybridization
Amo16g3643 16 147162854 147166643 Amo08g2101 08 33866650 33870364 PCT
Amo08g2101 08 33866650 33870364 Amo16g3643 16 147162854 147166643 PCT