Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2101 ATGTCTCAAGTCTTTGGCTTTTCAGGTGGTGACGATTTTTGCACTGGGGGGTCAGTATATGCGAACCCAAAGGATGCTAACATCTTCTTGTCGCTCGGTCGATCAGTTGACTTTTACTACCCTCTTCCTAAGAGGTCTCGCATCAGCGTTTCATTTGATCTCGATGGAGATTGGTTTGAGCAGAAGCAGAAGACATCTATTGAAGCCCTGCCAGATGAGTGCCTCTTTGAGATCCTTAGGAGGTTGCCTGCTGGCCAAGCTAGGAGCGCTTGCGCTAACGTGTCAAAGCGCTGGCTTATGCTTCTAAGCAGCATCTCCAATAGTGAGATTTACAGCAACGCAAATGAAAAGGAGCTTAGTGACAAGGAGGGTGATGATCTGGAATTCGGAGATGAGGGATTCCTCTCCCGGAGCTTGGAAGGAAAGAAGGCTACTGATGTTAGACTCGCTGCCATCGCTGTGGGGACATCACATCGCGGTGGATTGGGTAAACTTTCAATCCGTGGAAGCAACTCAGATCGTGGGGTTACTAATCTTGGTCTCAAGGCAGTTGCTCGTGGATGCCCTTCTCTGAAGGCTTTCTCTCTGTGGAACGTTTCTACTGTTAGTGATGAAGGCTTGATCGAGGTTGCTGAGGGGTGTCAAAAGTTAGAGAAGCTTAACCTTTGCAAGTGCTCCGCAATTTCCGACAAGGCTTTAATTGAAGTCGCAAAGAAGTGCCCAAATCTGACCGAATTGTCTATTGAGTCTTGCCCTCAAATTGGCAATGAAGGTCTACAGGCTGTGGGAAAGTTGTGTGCCAATCTAAGGTCGGTCTCAATCAAGGATTGCACCGGAGTCGGTGATCAGGGAATAGCTGGCCTGCTAACTTCTGCTTCCGTTGTTCTGAGAAAGGTGAAGCTCGAGTCGCTGGCGGCTGTATCTGATCTCTCTCTGGCAGTTATTGGGCACTATGGATTTTCGGTCACAGATCTTGTCCTCAATTGCCTTCCAAATGTTAATGAGAAGGGTTTCTGGGTTATGGCCAATGGTCGTGCGCTGCAGAAACTTGCGTCCCTCACAATCGGATCCTGCCGAGGTATAACAGATGCTGCTATTGTAGCTATTGGAAAGGGTTGTCCAAATGTGAGGAACTTCCATCTCAGCAAGTGTGCATTTCTGTCGGACAACGGGTTGGTATCATTAACCAAGGCAGCTCCATCGATCGAGAGCCTACAATTGGAAGAGTGCCACAGGTTTACCCAATTTGGGTTTTTTGGTATCCTTTTTAACTGTGGTGCAAAATTGAAGGCTCTTAATGTCGTTAGCTGCTATGGAATTAAGGATCTGAATCTGGCACTGCCAGCTGGATCTCCTTGCTCCCTTACCTCACTATCAATCTCTGACTGTCCTGGATTTGGAAATGCTAATCTTGCTGTGCTTGGGAGGCTTTGCCCACGTCTTAAGCATGTCGAATTGAGTGGACTGGCAGGAATAACTGACGCAGGGTTTCTTCCACTGCTTGAGAGCTCTGAGGCTGGTTTGGTTAAAGTTAACCTTAGCGGTTGCCTGAATCTGACTGACATAGTAGTCATCTCCTTGGCCAATTCACATGGCTGGACTCTTGAGGTGCTTAACCTTGATGGCTGCCGAAACATCACTGACGCCAGCTTAAAGGCAATTGCAGTCAATTGCCCCTTGCTCTCTGATCTCGACGTTTCCAAGTGCGCCATCACTGATGCCGGGATTGCTGCCCTTGCCCGTGGCAAACAGCTCAATCTGGAGATCCTTTCTCTGTCATGTTGCTCTTCAGTATCAGAGAAGAGCTTGCCTGCGTTGAGGAAACTTGGCAACAGCCTCATCGGACTGAACATCCGGCACTGCAGCGCAATCAGCAGCCGTGCAGTTGGCATGCTTGTTGAACATCTCTGGAGGTGTGACATCCTCTGTTGA 1932 0.4865 MSQVFGFSGGDDFCTGGSVYANPKDANIFLSLGRSVDFYYPLPKRSRISVSFDLDGDWFEQKQKTSIEALPDECLFEILRRLPAGQARSACANVSKRWLMLLSSISNSEIYSNANEKELSDKEGDDLEFGDEGFLSRSLEGKKATDVRLAAIAVGTSHRGGLGKLSIRGSNSDRGVTNLGLKAVARGCPSLKAFSLWNVSTVSDEGLIEVAEGCQKLEKLNLCKCSAISDKALIEVAKKCPNLTELSIESCPQIGNEGLQAVGKLCANLRSVSIKDCTGVGDQGIAGLLTSASVVLRKVKLESLAAVSDLSLAVIGHYGFSVTDLVLNCLPNVNEKGFWVMANGRALQKLASLTIGSCRGITDAAIVAIGKGCPNVRNFHLSKCAFLSDNGLVSLTKAAPSIESLQLEECHRFTQFGFFGILFNCGAKLKALNVVSCYGIKDLNLALPAGSPCSLTSLSISDCPGFGNANLAVLGRLCPRLKHVELSGLAGITDAGFLPLLESSEAGLVKVNLSGCLNLTDIVVISLANSHGWTLEVLNLDGCRNITDASLKAIAVNCPLLSDLDVSKCAITDAGIAALARGKQLNLEILSLSCCSSVSEKSLPALRKLGNSLIGLNIRHCSAISSRAVGMLVEHLWRCDILC* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2101 643 Gene3D Ribonuclease Inhibitor 505 642 IPR032675 -
Amo08g2101 643 Gene3D Ribonuclease Inhibitor 159 236 IPR032675 -
Amo08g2101 643 PANTHER UNCHARACTERIZED 16 634 - -
Amo08g2101 643 SMART LRR_CC_2 399 424 IPR006553 -
Amo08g2101 643 SMART LRR_CC_2 266 291 IPR006553 -
Amo08g2101 643 SMART LRR_CC_2 240 265 IPR006553 -
Amo08g2101 643 SMART LRR_CC_2 214 239 IPR006553 -
Amo08g2101 643 SMART LRR_CC_2 584 609 IPR006553 -
Amo08g2101 643 SMART LRR_CC_2 610 635 IPR006553 -
Amo08g2101 643 SMART LRR_CC_2 478 503 IPR006553 -
Amo08g2101 643 SMART LRR_CC_2 532 557 IPR006553 -
Amo08g2101 643 SMART LRR_CC_2 188 213 IPR006553 -
Amo08g2101 643 SMART LRR_CC_2 347 372 IPR006553 -
Amo08g2101 643 SMART LRR_CC_2 558 582 IPR006553 -
Amo08g2101 643 SMART LRR_CC_2 505 530 IPR006553 -
Amo08g2101 643 SMART LRR_CC_2 453 477 IPR006553 -
Amo08g2101 643 SMART LRR_CC_2 373 398 IPR006553 -
Amo08g2101 643 SUPERFAMILY RNI-like 209 641 - -
Amo08g2101 643 Gene3D - 60 108 - -
Amo08g2101 643 Gene3D Ribonuclease Inhibitor 237 446 IPR032675 -
Amo08g2101 643 Gene3D Ribonuclease Inhibitor 447 504 IPR032675 -
Amo08g2101 643 SMART fbox_2 70 111 IPR001810 GO:0005515
Amo08g2101 643 ProSiteProfiles F-box domain profile. 64 114 IPR001810 GO:0005515
Amo08g2101 643 SUPERFAMILY F-box domain 63 104 IPR036047 GO:0005515
Amo08g2101 643 Pfam Leucine Rich repeat 558 580 IPR001611 GO:0005515
Amo08g2101 643 Pfam Leucine Rich repeat 534 555 IPR001611 GO:0005515
Amo08g2101 643 Pfam Leucine Rich repeat 239 262 IPR001611 GO:0005515
Amo08g2101 643 PANTHER EIN3-BINDING F-BOX-LIKE PROTEIN 16 634 - -
Amo08g2101 643 Pfam F-box domain 70 106 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2101 Amo-Chr8 33866650 33870364 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2101 K14515 - gmx:100820247 943.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3643 16 147162854 147166643 Amo08g2101 08 33866650 33870364 PCT
Amo06g2856 06 94048870 94052671 Amo08g2101 08 33866650 33870364 PCT
Amo08g2101 08 33866650 33870364 Amo16g3643 16 147162854 147166643 PCT
Amo08g2101 08 33866650 33870364 Amo06g2856 06 94048870 94052671 PCT