Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3187 GGCTGCAGTGACGAAGCTGTGACTGACGACATAGCAGCGACCGTGATACTGGGAGAGGAGAATAGAGGCTGCCACGGCAAGAGCAGATCGGCAGCAAAAGCAGAGGACCTCTGGCGAGACTGGCTGGGGGTTTTGTTCCTCATTCACTTGAAAATCACCCCTATGCACTCAATATATCGTTCTACTGCCAGCGATTCCGCTAGCCTATGTTGTAAGGTTCTGGTATCTAGAAGTTTCTCTTCACAGTTAGTATCTTCTCACTGTGTAGGAGCTAGAGAGTTTTGGCATGAAGAACAATGTCTAGGGCTTACTAAATATGCTGACATTCTCATTGCAAAAGCTAGCAAAGGGAACAGCGACCAAGAAATTCTCCGGTCTCTGTTCAATGATCCAGCTTGTGATGGTATACATCTCTCTCAGAACCTTATTCAAAGGTTACTCCATCGATTTAAAGACGATTGGAGGTCTGCATTGGGGATATTCAAATGGGCCGGTTTGCGATCAGGCTTTAGACACTCGCCGGAATCGTATGATATGATGATAGACATATTAGGGAAAATGAAGCAAATGGAAAAGTTGAGAGATTTCTTGGAAGAAATGCATGAGGTGGGTCTTGTTACTCTGAATACTATAGCTAAGGTGATGAGGAGGTTTGTTGGTGCAGGACAGTGGGAAGATGCAGTAAGGATATTTGATAGCTTAGAATCTCTTGGGTTGGAGAAGAACACCGAATCCATGAACTTGTTGCTTGATACGCTATGCAAAGAGGAATTTGTTGAACAAGCTCGTGAAATTTTCTTGGAGCTAAAGCAGCACATTGCTCCAAATGCTTATACGTTTAACATACTTATACACGGCTGGTGCAAAGTCCGTCGTGTGGACGAGGCACAGTGGACAATCCAAGAGATGAAAGGACATGGTTGTCACCCTTGTGTTATAAGTTACTCAACCATCATCCAATGCTATTGCCAAGAACAGAATTTTGACAGGGTCTACGAGCTGCTTGATGAAATGCAAGCACATGGTTGCTCCCCAAATGTGGTCACTTATACTACCATCATGTCTGCATTGGCGAAGGCAGAAAAATTTGAGGAAGCTTTGCAATTAGTTGAGAGAATGAGGTCTGTTGGATGCAAACCTGATACCTTATTCTATAATTCATTCATTTACACATTAGGGAGAGCAGGCAAAGTAGATGATGCTACGTTTGTATTCAAGGTGACGATGCCTAATGATGGTGTTGTCCCAAATACATCCACCTATAATTCAATGATTTCTATGTTCTGTCATTATGCACAAGAGAATAGGGCTTTTGACACATTGCGGGAGATGCAAGATGCGGGCCTCTGTAAGCCTGATCTTCAAACTTACCACCCAATGATCAAATTATGCTTTAAAACGGGAAAAATAGATAGTTGGTTGAAGGATATATTGAATGACATGGTCAACAAACATCATCTTGGTCTTGATATCTCTACCTATACACTTCTAATTCATGGGCTCTGTAGAGCAGATAGATACAAGTGGGCATACTCTTTATTTGAGGACATGATTGATCAAGATGTAATGCCTAGATTGAAAACTTGTCGTTTGCTATTGGAAGAAGTCAAACAGAAAAATATGTATGAAGCCTCCGAGAAAATTGAGGACCTTATGAAGAAAATGTTTTCAAATATGGTTTCTCCAATGATTGCTGAGGGTTTTGCAGAGATTGAGATACTAGTATGGAATATTGAAATGAGAATACTGGAGCTTACTTGCCTGAAGCCTCTGTCCATACTCTTGATGTATATATTGCTGCCAGTCACAGGCATACAAGTACCAGAGACCACCCAAATCCTATCGGTTCAGTGCCGAGTGATAATATCAAATTTTATCACTATCAAGCAAATGGAAAGTAAAACACAACTGAGCTACCTATGTTGTGAAAATATCCTTGCTCGTTTTCTTTGCTTGGTTAATGTCTTGCTACTTTTTAACGGCAAGCAACAACAATACTTCATAGAAGCTTACATTGATGCTAAAAGAAGGAGGACTCAAGCCTTCCCATTAGCAGCGATTGCTGGACCCGGACTCCCCTTCCTTCGCCTCTCGCTGAAGCTGCGGCACGGCACCAAGCTCGGCAGGCACCGCTGCTTAGATTTAACAGCGCTACCTGCAGAGTTAGTCTCTGAGAAATATGGAGTGCTGTTTGCAGATTTAGATAGTAGAAAGTCCTGTATAATTGGTTTGTCTCCTTCATTGTTTTCGCCGGCATCTTTGTGTTCTCTGATACTTTCGCGAAAAAGCTCCAACAGTTTCTTTTTCCTTTCTGTTGGAGATGGCTCGGCAGCAGAACCAGGAATGCTATTGGTCATCACAGGGGTGGCGAAAGAATGGTGCACTGGGGTGGTGCCACGCGATGGGGTGAACTCTAAATTGAAACAAAGAAATGTTAGATCATTGAAGAAACAACCATGCTACGTCCACATCTAA 2475 0.4255 GCSDEAVTDDIAATVILGEENRGCHGKSRSAAKAEDLWRDWLGVLFLIHLKITPMHSIYRSTASDSASLCCKVLVSRSFSSQLVSSHCVGAREFWHEEQCLGLTKYADILIAKASKGNSDQEILRSLFNDPACDGIHLSQNLIQRLLHRFKDDWRSALGIFKWAGLRSGFRHSPESYDMMIDILGKMKQMEKLRDFLEEMHEVGLVTLNTIAKVMRRFVGAGQWEDAVRIFDSLESLGLEKNTESMNLLLDTLCKEEFVEQAREIFLELKQHIAPNAYTFNILIHGWCKVRRVDEAQWTIQEMKGHGCHPCVISYSTIIQCYCQEQNFDRVYELLDEMQAHGCSPNVVTYTTIMSALAKAEKFEEALQLVERMRSVGCKPDTLFYNSFIYTLGRAGKVDDATFVFKVTMPNDGVVPNTSTYNSMISMFCHYAQENRAFDTLREMQDAGLCKPDLQTYHPMIKLCFKTGKIDSWLKDILNDMVNKHHLGLDISTYTLLIHGLCRADRYKWAYSLFEDMIDQDVMPRLKTCRLLLEEVKQKNMYEASEKIEDLMKKMFSNMVSPMIAEGFAEIEILVWNIEMRILELTCLKPLSILLMYILLPVTGIQVPETTQILSVQCRVIISNFITIKQMESKTQLSYLCCENILARFLCLVNVLLLFNGKQQQYFIEAYIDAKRRRTQAFPLAAIAGPGLPFLRLSLKLRHGTKLGRHRCLDLTALPAELVSEKYGVLFADLDSRKSCIIGLSPSLFSPASLCSLILSRKSSNSFFFLSVGDGSAAEPGMLLVITGVAKEWCTGVVPRDGVNSKLKQRNVRSLKKQPCYVHI* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3187 824 Gene3D Tetratricopeptide repeat domain 341 408 IPR011990 GO:0005515
Amo16g3187 824 Gene3D Tetratricopeptide repeat domain 135 270 IPR011990 GO:0005515
Amo16g3187 824 Gene3D Tetratricopeptide repeat domain 271 340 IPR011990 GO:0005515
Amo16g3187 824 Gene3D Tetratricopeptide repeat domain 409 576 IPR011990 GO:0005515
Amo16g3187 824 Pfam PPR repeat 490 517 IPR002885 -
Amo16g3187 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Amo16g3187 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Amo16g3187 824 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 70 555 - -
Amo16g3187 824 Pfam PPR repeat 176 204 IPR002885 -
Amo16g3187 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Amo16g3187 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Amo16g3187 824 Pfam PPR repeat family 416 464 IPR002885 -
Amo16g3187 824 Pfam PPR repeat family 310 359 IPR002885 -
Amo16g3187 824 Pfam PPR repeat family 241 289 IPR002885 -
Amo16g3187 824 Coils Coil 353 373 - -
Amo16g3187 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Amo16g3187 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 416 IPR002885 -
Amo16g3187 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Amo16g3187 824 PANTHER OS02G0601600 PROTEIN 70 555 - -
Amo16g3187 824 TIGRFAM PPR: pentatricopeptide repeat domain 348 382 IPR002885 -
Amo16g3187 824 TIGRFAM PPR: pentatricopeptide repeat domain 493 524 IPR002885 -
Amo16g3187 824 TIGRFAM PPR: pentatricopeptide repeat domain 313 347 IPR002885 -
Amo16g3187 824 TIGRFAM PPR: pentatricopeptide repeat domain 176 206 IPR002885 -
Amo16g3187 824 TIGRFAM PPR: pentatricopeptide repeat domain 420 453 IPR002885 -
Amo16g3187 824 TIGRFAM PPR: pentatricopeptide repeat domain 278 310 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3187 Amo-Chr16 136233357 136249693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3187 249 574 Miscellaneous Gene Families AT4G11690 27.576 3.77e-34 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3187 - - adu:107494799 1024.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3187 16 136233357 136249693 Amo06g2605 06 89452487 89455036 hybridization