Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2605 ATGCACTCAATATATCGTTCTGTTGCCAGCGATTCCGCTAGCCTATGTTGTAAGGTTCTGGTATCTAGAAGTTTCTCTTCACAGTTAGTATCTTCTCACTGTGTAGGAGCTAGAGAGTTTTGGCATGAAGAACAATGTCTAGAGCTTACTAAATATGCTGACATTCTCATTGCAAAAGCTAGCAAAGGGAATAGCGACCGAGAAATTCTCCGGTCTCTTTTCAATGATCCAGCTTGTGATGGTATACATCTATCTCAGAACCTTATTCAAAGGTTACTCCATCGATTTAAAGACGATTGGAGGTCTGCATTGGGGATATTCAAATGGGCAGGTTTGCGATCAGGCTTTAGACACTCGCCGGAATCGTATGATATGATGATAGACATATTAGGGAAAATGAAGCAAATGGAAAAGTTGAGAGATTTCTTGGAAGAAATGCATGAGGTGGGTCTTGTTACTCTGAATACTATAGCTAAGGTGATGAGGAGGTTTGTTGGTGCAGGACAGTGGGAAGATGCAGTAAGGATATTTGATAGCTTAGAATCTCTTGGGTTGGAGAAGAACACCGAATCCATGAACTTATTGCTTGATACGCTATGCAAAGAGGAATTTGTTGAACAAGCTCGTGAAATTTTCTTGGAGCTAAAGCAGCACATTGCTCCAAATGCTTATACGTTTAACATATTTATACATGGCTGGTGCAAAGTCCGTCGTGTGGATGAGGCACAGTGGACAATCCAAGAGATGAAAGGACATGGTTGTCACCCTTGTGTTATAAGTTACTCAACCATCATCCAATGCTATTGCCAAGAACAGAATTTTGACAGGGTCTACGAGCTGCTTGATGAAATGCAAGCACATGGTTGCTCCCCAAATGTGATTACTTATACTACCATCATGTCTGCATTGGCGAAGGCAGAAAAATTTGAGGAAGCTTTGCAAGTAGTTGAGAGAATGAGGTCTGTTGGATGCAAACCTGATACCTTATTCTACAATTCATTCATTTACACATTAGGGAGAGCAGGCAAAGTAGATGATGCTATGTTTGTATTCAAGGTGACGATGCCTAATGATGGTGTTGTCCCAAATACATCCACCTATAATTCAATGATTTCTATGTTCTGTCATTATGCACAAGAGAATAGGGCTTTTGATACATTGCGGGAGATGCAAGATGCGGGCCTCTGTAAGCCTGATCTTCAAACTTACCACCCAATGATCAAATTATGCTTTAAAACGGGAAAAATAGATAGTTGGTTGAAGGATATATTGAATGACATGGTCAACAAACATCATCTTGGTCTTGATATCTCTACCTATACACTTCTGATTCATGGGCTCTGTAGAGCAGATAGATACAAGTGGGCATACTCTTTATTTGAGGACATGATTGATCAAGATGTAATGCCTAGATTGAAAACTTGTCGTTTGCTATTGGAAGAAGTCAAACAGAAAAATATGTATGAAGCCTCCGAGAAAATTGAGGACCTTATGAAGAAAATGTAA 1506 0.3991 MHSIYRSVASDSASLCCKVLVSRSFSSQLVSSHCVGAREFWHEEQCLELTKYADILIAKASKGNSDREILRSLFNDPACDGIHLSQNLIQRLLHRFKDDWRSALGIFKWAGLRSGFRHSPESYDMMIDILGKMKQMEKLRDFLEEMHEVGLVTLNTIAKVMRRFVGAGQWEDAVRIFDSLESLGLEKNTESMNLLLDTLCKEEFVEQAREIFLELKQHIAPNAYTFNIFIHGWCKVRRVDEAQWTIQEMKGHGCHPCVISYSTIIQCYCQEQNFDRVYELLDEMQAHGCSPNVITYTTIMSALAKAEKFEEALQVVERMRSVGCKPDTLFYNSFIYTLGRAGKVDDAMFVFKVTMPNDGVVPNTSTYNSMISMFCHYAQENRAFDTLREMQDAGLCKPDLQTYHPMIKLCFKTGKIDSWLKDILNDMVNKHHLGLDISTYTLLIHGLCRADRYKWAYSLFEDMIDQDVMPRLKTCRLLLEEVKQKNMYEASEKIEDLMKKM* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2605 501 Coils Coil 299 319 - -
Amo06g2605 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Amo06g2605 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Amo06g2605 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 362 IPR002885 -
Amo06g2605 501 Gene3D Tetratricopeptide repeat domain 355 501 IPR011990 GO:0005515
Amo06g2605 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Amo06g2605 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Amo06g2605 501 Gene3D Tetratricopeptide repeat domain 217 286 IPR011990 GO:0005515
Amo06g2605 501 Gene3D Tetratricopeptide repeat domain 83 216 IPR011990 GO:0005515
Amo06g2605 501 Gene3D Tetratricopeptide repeat domain 287 354 IPR011990 GO:0005515
Amo06g2605 501 Pfam PPR repeat family 362 410 IPR002885 -
Amo06g2605 501 Pfam PPR repeat family 256 305 IPR002885 -
Amo06g2605 501 Pfam PPR repeat family 187 235 IPR002885 -
Amo06g2605 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Amo06g2605 501 TIGRFAM PPR: pentatricopeptide repeat domain 224 256 IPR002885 -
Amo06g2605 501 TIGRFAM PPR: pentatricopeptide repeat domain 259 293 IPR002885 -
Amo06g2605 501 TIGRFAM PPR: pentatricopeptide repeat domain 439 470 IPR002885 -
Amo06g2605 501 TIGRFAM PPR: pentatricopeptide repeat domain 331 364 IPR002885 -
Amo06g2605 501 TIGRFAM PPR: pentatricopeptide repeat domain 122 152 IPR002885 -
Amo06g2605 501 TIGRFAM PPR: pentatricopeptide repeat domain 366 399 IPR002885 -
Amo06g2605 501 TIGRFAM PPR: pentatricopeptide repeat domain 294 328 IPR002885 -
Amo06g2605 501 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Amo06g2605 501 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 18 501 - -
Amo06g2605 501 Pfam PPR repeat 122 150 IPR002885 -
Amo06g2605 501 PANTHER OS02G0601600 PROTEIN 18 501 - -
Amo06g2605 501 Pfam PPR repeat 323 351 IPR002885 -
Amo06g2605 501 Pfam PPR repeat 436 463 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2605 Amo-Chr6 89452487 89455036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2605 160 490 Miscellaneous Gene Families AT4G11690 23.193 5.54e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2605 - - adu:107494799 1014.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3187 16 136233357 136249693 Amo06g2605 06 89452487 89455036 hybridization