Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3181 ATGGGAGTGACACCAAATATCGCTCCTTCGATGTTATCTGCTGACTTCGCTAATTTGTCGTCGGAGGCTCACCGCATTCTCAATTCCGGCGCCGATTGGCTCCACATGGATGTCATGGATGGGCACTTTGTCCCCAATTTAACCATTGGTGCTCCAGTCATTGAAAGTTTGAGAAAGCATACAACGGCATATCTGGACTGTCACATGATGGTTACAAATCCTCTAGATTATGTTGAACCTTTGGGGAAGGCCGGTGCTTCTGGTTTTACATTTCATGTCGAGACTTCTAAAGATAACTGGCAAGAACTTATTCAAATGATAAAGTCACACGGCATGAGACCTGGTGTAGCATTGAATCCAGGGACACCCATTGGCGAGGTTTATCCTCTGGTTGAAGCTGAAAGACCAGTGGAAATGGTTCTTGTGATGACTGTAGAGCCTGGATTTGGTGGACAAAAATTTATGCCGGAGATGATGGATAAGGTACGCATACTGAGAAAGAGGTATCCGTTGCTTGACATAGAGGTTGATGGTGGTTTAGGACCTTCAAACATAGACATGGCGGCGTCTGCAGGTGCAAACTGCATTGTTGCAGGAAGTTCAGTTTTTGGAGCCTCTGAGCCAGCTGAAGTAATATCCTTGCTAAGGAGCTCTGTTCAGAAAGCCTAG 669 0.4589 MGVTPNIAPSMLSADFANLSSEAHRILNSGADWLHMDVMDGHFVPNLTIGAPVIESLRKHTTAYLDCHMMVTNPLDYVEPLGKAGASGFTFHVETSKDNWQELIQMIKSHGMRPGVALNPGTPIGEVYPLVEAERPVEMVLVMTVEPGFGGQKFMPEMMDKVRILRKRYPLLDIEVDGGLGPSNIDMAASAGANCIVAGSSVFGASEPAEVISLLRSSVQKA* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3181 222 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 140 162 IPR000056 GO:0005975|GO:0016857
Amo16g3181 222 Gene3D Aldolase class I 2 222 IPR013785 -
Amo16g3181 222 PIRSF RPE 1 222 IPR026019 GO:0004750|GO:0006098
Amo16g3181 222 SUPERFAMILY Ribulose-phoshate binding barrel 5 221 IPR011060 -
Amo16g3181 222 Hamap Ribulose-phosphate 3-epimerase [rpe]. 4 218 IPR026019 GO:0004750|GO:0006098
Amo16g3181 222 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 1 221 IPR000056 GO:0005975|GO:0016857
Amo16g3181 222 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 34 48 IPR000056 GO:0005975|GO:0016857
Amo16g3181 222 TIGRFAM rpe: ribulose-phosphate 3-epimerase 7 216 IPR026019 GO:0004750|GO:0006098
Amo16g3181 222 PANTHER RIBULOSE-PHOSPHATE 3-EPIMERASE 1 221 - -
Amo16g3181 222 CDD RPE 7 216 IPR000056 GO:0005975|GO:0016857
Amo16g3181 222 Pfam Ribulose-phosphate 3 epimerase family 7 203 IPR000056 GO:0005975|GO:0016857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3181 Amo-Chr16 136035031 136039303 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3181 K01783 - gmx:100527490 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3181 16 136035031 136039303 Amo16g3181 16 136035031 136039303 ECH
Amo16g3181 16 136035031 136039303 Amo06g2600 06 89385344 89388446 hybridization