Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2600 ATGGGAGTGACCCCAAATATCGCTCCTTCGATGTTATCTGCTGATTTCGCTAATTTGTCGTCGGAGGCTCACCGCATTCTCAATTCCGGCGCCGATTGGCTCCACATGGATGTCATGGATGGGCACTTTGTCCCCAATTTAACCATTGGTGCTCCAGTCATTGAAAGTTTGAGAAAGCATACAACGGCATATCTGGACTGTCACATGATGGTTACAAATCCTCTAGATTATGTTGAACCTTTGGGGAAAGCCGGTGCTTCTGGTTTTACATTTCATGTCGAGACATCTAAAGATAACTGGCAAGAACTTATTCAAATGATAAAGTCACACGGCATGAGACCTGGTGTAGCATTGAATCCAGGGACACCCATTGGCGAGGTTTATCCTCTGGTTGAGGCTGAAAAACCAGTGGAAATGGTTCTTGTGATGACTGTAGAGCCTGGATTTGGTGGACAAAAATTTATGCCGGAGATGATGGATAAGGTACGCATACTGAGAAAGAGGTATCCATTGCTTGACATAGAGGTATCTTGA 534 0.4476 MGVTPNIAPSMLSADFANLSSEAHRILNSGADWLHMDVMDGHFVPNLTIGAPVIESLRKHTTAYLDCHMMVTNPLDYVEPLGKAGASGFTFHVETSKDNWQELIQMIKSHGMRPGVALNPGTPIGEVYPLVEAEKPVEMVLVMTVEPGFGGQKFMPEMMDKVRILRKRYPLLDIEVS* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2600 177 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 1 176 IPR000056 GO:0005975|GO:0016857
Amo06g2600 177 Gene3D Aldolase class I 2 177 IPR013785 -
Amo06g2600 177 SUPERFAMILY Ribulose-phoshate binding barrel 5 175 IPR011060 -
Amo06g2600 177 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 140 162 IPR000056 GO:0005975|GO:0016857
Amo06g2600 177 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 34 48 IPR000056 GO:0005975|GO:0016857
Amo06g2600 177 CDD RPE 7 176 IPR000056 GO:0005975|GO:0016857
Amo06g2600 177 Pfam Ribulose-phosphate 3 epimerase family 7 171 IPR000056 GO:0005975|GO:0016857
Amo06g2600 177 PANTHER RIBULOSE-PHOSPHATE 3-EPIMERASE 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2600 Amo-Chr6 89385344 89388446 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2600 K01783 - gmx:100500085 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3181 16 136035031 136039303 Amo06g2600 06 89385344 89388446 hybridization