Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2970 ATGGGTGCGAGTCGGAAGCTTCAGGGAGAGATCGATCGCGTTCTCAAGAAAGTCCAGGAAGGTGTTGAAGTCTTTGATAGTATCTGGAACAAGGTTTACGACACAGATAATGCCAACCAGAAGGAGAAGTTTGAAGCAGACCTCAAGAAGGAGATTAAGAAGCTTCAGAGGTACAGGGACCAAATTAAGACTTGGATTCAGTCCAGCGAAATCAAGGACAAGAAGGTTAGTGCATCTTATGAGCAAGCTCTAGTGGATGCCCGCAAGTTAATTGAACGTGAAATGGAAAGGTTTAAGATATGTGAAAAGGAGACAAAGACCAAAGCATTCTCTAAGGAAGGCTTAGGTCAACAGCCTAAGACTGATCCAAAAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGGTTGGGGAGTTAGAATCTCAGATTGACAACTTTGAAGCTGAGCTTGAAGGGCTTTCTGTCAAGAAAGGAAAGAACAGGCCACCTAGATTGACACATCTAGAGACATCAATTACTCGGCACAAGGCTCATATAAAGAAATGTGAATTTATCTTGAGGCTATTAGACAATGATGAGTTAAGTCCGGAGCAGGTTAATGATGTCAAGGATTTCTTGGATGATTATGTAGAATGCTGTCATTTAACCTTCCGATCTTTATGTATTCATTTTTATAAACATTTTTACAACTTTCTTCACTATCATTTTATGAAAGGGCACAATGACGTTCCGCTGCCCGTTTTCCCTTACCATTTCTTTGGGACTCCTTACTCGTCGCAAAGTTATTCTGTCCTTGGGGAAAGTGTTGTACGTGCCATCTGGTTCCTATACACACCAAACAATCGATATCAAGTTGATCAGTCTCAATATCGGAAGTATAGTGCTTCAAAGTACCAAAGGTACACTCATGGACTTCATGCTAGACGAACCACAACCCTTGCTACTGCCCAGGCATCTCAAACATATATTCATTCAATCTCAATTCATATTATCAACATTCATTGTTACCAAATCTCAAACATTAACTTGGAGCAAGTGGGACGAAACACAACCCTTGCTACTATCCAACCAAACGACGCGCAAGCGTCAGCCACGCGTACGCGTGGGTGCTCTTGCAATTTGAGACACTATTTTAATGCATATAGCAATCAATCTGGATACTCTTACCTTGACTTAATCAAAATGAATATTTACGACTTGTTTAAAGACGATAACTTTTCTGATTCTTTTGAGAAAATATTATTTGCTCTCCTTCTCCTCGCGTTTGTCCTCTCCCTTGCGAGCGTTCTCTCTCTGTCCTCTGGCTCTGGCGACAGCGACGGCAACCGGCGCAAGGAGCAGCACGACGCAACGATCCTTCTTCCTCTCTTCTTCCTCTGTTCCCTCACCCTCTCCCTCTATTCTTCGTTTCCTTCTTTCTTCCCTTCTGTTTCCCCCTCAAGCTCCCCGTTCCCTTTCTTTCCCTTTCTGATTCCATATCCAGCTAGTAATGCTGGGTTACGTTGGGAGCGGAACTTGTGGTTTGGTTCTCACCCCCAAATTTTTCACCCTTTCAGTGACACAGGTTTGAAGACATGTTACAATATGGTATCAGAGCAGTCCTTCCTGTATAGCCTTGAGAGTGGACTGACTATGCTTCATTGCATACTTTGA 1662 0.4284 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGELESQIDNFEAELEGLSVKKGKNRPPRLTHLETSITRHKAHIKKCEFILRLLDNDELSPEQVNDVKDFLDDYVECCHLTFRSLCIHFYKHFYNFLHYHFMKGHNDVPLPVFPYHFFGTPYSSQSYSVLGESVVRAIWFLYTPNNRYQVDQSQYRKYSASKYQRYTHGLHARRTTTLATAQASQTYIHSISIHIINIHCYQISNINLEQVGRNTTLATIQPNDAQASATRTRGCSCNLRHYFNAYSNQSGYSYLDLIKMNIYDLFKDDNFSDSFEKILFALLLLAFVLSLASVLSLSSGSGDSDGNRRKEQHDATILLPLFFLCSLTLSLYSSFPSFFPSVSPSSSPFPFFPFLIPYPASNAGLRWERNLWFGSHPQIFHPFSDTGLKTCYNMVSEQSFLYSLESGLTMLHCIL* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2970 553 Coils Coil 132 159 - -
Amo16g2970 553 Coils Coil 41 61 - -
Amo16g2970 553 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 215 IPR007207 GO:0005634|GO:0006355
Amo16g2970 553 PANTHER CCR4 NOT-RELATED 1 216 IPR040168 GO:0030015
Amo16g2970 553 PANTHER BNAA10G16600D PROTEIN 1 216 - -
Amo16g2970 553 MobiDBLite consensus disorder prediction 110 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2970 Amo-Chr16 129545228 129557994 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2970 K12580 - gmx:100819202 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2970 16 129545228 129557994 Amo16g2970 16 129545228 129557994 ECH
Amo16g2970 16 129545228 129557994 Amo06g2265 06 80444096 80449366 hybridization