Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2958 ATGGCTACTCCACTTCAAGACCGAGTCGCAATCATCACCGGCTCCTCCCGTGGAATCGGACGAGAAATCGCTCTCCATCTCGCCTCACTCGGCGCCAGAGTCCTTATCAACTACACCTCCAACTCCTCCCTAGGTGACTCACTCGCTGCACAGATCAACTCCCACGCCGCCGCCGGAGCTGTCCTCCCTCGCGCCATCGCCGTCCGAGGCGACGTCTCGGAACCGAACGACGTGAAGGCGCTGTTCGACTCGGCGGAGCGCGAGTTCGGCTCGGCGGTTCACATCCTGGTTAACGCGGCCGGTGTTCTTGATAGCAAGTACTCGACCATAGCCAACATTGCAGTGGAGGATTTCGATCGCATTTTCAGTGTAAATGCAAGAGGATCATTCCTGTGCTGCAAAGAGGCAGCAAACCGATTGAAACGTGGTGGTGGAGGTCGAATCATAATGCTAAGTTCATCGATGGTGGGTGCACTGAGACCAACTTTTGGGGCATACTCAGCATCCAAAGCAGCTGTTGAGGCCATGATTCATATTCTGGCAAAAGAGCTGAAGGGAACTGGGATTACGGCGAACTGTGTTGCACCTGGGCCAATTGCAACTGAAATGTACTATGCTGGGAAGACCGAAGAGCAAGTGAAAGCGAATATTGCAGAGTCTCCTCTCAGTAGGCTTGGTGAGCCAAAGGATGTAGCTCCTTTGGTGGGATTTTTGGCTACTGATGCTGGTGAATGGGTTAATGGGCAGGTCATTCGGGTTAATGATCGAGTCGCAATCGTCACCGGCTCTTCTCGCGGAATCGGCCGAGAAATCGCGATTCATCTCGCCTCACTCGGCGCCCTAGTCGTCGTCAACTACACCTCCAGCTCGTCCCAAGCCGACTCAGTCGTCGCTCAGATCAACTCCGCCGCCGATTCTCCGCCGCGAGCGGTCGCAGTCAAAGCCGACATCTCAAACCCTGACGACGTCAAATCGCTCTTCGATTCCGCAGAGCGAGCCTTCGACTCGGAGGTCCAAATACTGGTGAATTCCGCCGGTATCCTCGACGGAACATACCCGACGGTGGCGAACACCGACGTGGAGACCTTCGACAAGATCTTCTCGGTGAACACCCGGGGCGCATTCCTGTGCTGTAGAGAGGCAACGAACAGAGTGAAGCGCGGCGGCGGAGGGAGGATCGTCCTGCTGACGACGTCGTTGGTGAAGGCGCTGCGGGCGGGGTACGCGACGTATACGGCATCGAAGGCGGCGGTGGAAGCGATGGTTAAGATCGTTGCGAAGGAGCTAAAGGGGACGGGAATAACGGCGAACTGCGTGGCGCCAGGGCCGATAGCGACGGAGATGTTCTATGAGGGGAAGTCGGAGGAGCTTGTGGAGAAACTAAAGAATGATATTCCGTTAGGGCGTTTAGGGGAACCGAATGACGTGGCGAATTTGGTTGGTTTCTTGGTTAGTGATGGTGGCGAGTGGGTCAACGGCCAAGTAATTCGTGTCAATGGTGGCTTTATCTAG 1512 0.5575 MATPLQDRVAIITGSSRGIGREIALHLASLGARVLINYTSNSSLGDSLAAQINSHAAAGAVLPRAIAVRGDVSEPNDVKALFDSAEREFGSAVHILVNAAGVLDSKYSTIANIAVEDFDRIFSVNARGSFLCCKEAANRLKRGGGGRIIMLSSSMVGALRPTFGAYSASKAAVEAMIHILAKELKGTGITANCVAPGPIATEMYYAGKTEEQVKANIAESPLSRLGEPKDVAPLVGFLATDAGEWVNGQVIRVNDRVAIVTGSSRGIGREIAIHLASLGALVVVNYTSSSSQADSVVAQINSAADSPPRAVAVKADISNPDDVKSLFDSAERAFDSEVQILVNSAGILDGTYPTVANTDVETFDKIFSVNTRGAFLCCREATNRVKRGGGGRIVLLTTSLVKALRAGYATYTASKAAVEAMVKIVAKELKGTGITANCVAPGPIATEMFYEGKSEELVEKLKNDIPLGRLGEPNDVANLVGFLVSDGGEWVNGQVIRVNGGFI* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2958 503 CDD THN_reductase-like_SDR_c 256 503 - -
Amo16g2958 503 PRINTS Glucose/ribitol dehydrogenase family signature 432 449 IPR002347 -
Amo16g2958 503 PRINTS Glucose/ribitol dehydrogenase family signature 466 486 IPR002347 -
Amo16g2958 503 PRINTS Glucose/ribitol dehydrogenase family signature 257 274 IPR002347 -
Amo16g2958 503 PRINTS Glucose/ribitol dehydrogenase family signature 385 401 IPR002347 -
Amo16g2958 503 PRINTS Glucose/ribitol dehydrogenase family signature 336 347 IPR002347 -
Amo16g2958 503 PRINTS Glucose/ribitol dehydrogenase family signature 411 430 IPR002347 -
Amo16g2958 503 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 2 254 - -
Amo16g2958 503 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 254 503 - -
Amo16g2958 503 Gene3D - 1 253 - -
Amo16g2958 503 Gene3D - 254 502 - -
Amo16g2958 503 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 2 254 - -
Amo16g2958 503 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 254 503 - -
Amo16g2958 503 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 255 502 IPR036291 -
Amo16g2958 503 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 254 IPR036291 -
Amo16g2958 503 Pfam Enoyl-(Acyl carrier protein) reductase 14 254 - -
Amo16g2958 503 Pfam Enoyl-(Acyl carrier protein) reductase 262 502 - -
Amo16g2958 503 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 154 IPR002347 -
Amo16g2958 503 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Amo16g2958 503 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 166 185 IPR002347 -
Amo16g2958 503 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 153 181 IPR020904 GO:0016491
Amo16g2958 503 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2958 Amo-Chr16 129160054 129167590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g2958 242 502 Acyl Lipid Metabolism Gene Families AT1G24360 32.319 3.15e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2958 K00059 - pvy:116113569 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2958 16 129160054 129167590 Amo16g2958 16 129160054 129167590 ECH
Amo16g2958 16 129160054 129167590 Amo06g2256 06 80231403 80233614 hybridization