Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2256 ATGGCTACTTCCCAAAAACACACTCACTCACACTCTCACTCTCTATCTCTTCCGCTTCAAGATCGAGTTGCAATCGTCACCGGCTCCTCCCGCGGAATCGGACGAGAAATCGCTCTCCACCTCGCCTCACTTGGCGCCAGAATCGTCGTCAACTACGCCTCCAACTCCTCCCTCGCCGACTCACTTGTCGCCCAGATCAACTCCGACGCCAGCGTTGGAGGCGGAGCTGCTCTCCCTCGGGCAATTGCAGTTCGCGGCGATGTATCCGACCCGAACGGCGTGAAGGCGCTGTTTGACTCCGCGGAGCGGGAGTTCGAGTCGGCGGTTCACATCCTGGTCAACTCAGCGGGCGTAACTGACAGCAACTACCCGACCATAGCTAACACCCCCGTGGAGGATTTTGATCGCATTTTCAGTGTAAATACAAGAGGAGCATTCCTGTGCTGTAAAGAGGCAGCAAACCGATTAGTACGTGGTGGCAGAGGTCGAATTATACTGTTATCCTCATCAGCAGTGGCTGCATTGAGACCAACTATGGGTTCGTACACAGCATCCAAAGCCGCTGTTGAGGCCATGACACACATTTTGGCGAAGGAGCTGAAGGGAACAGGGATCACAGCTAACTGTGTTGCACCTGGCCCAATTGCAACCGAAATGTACTTTGCCGGGAGGACTGAAGAGCAAATAAAAGCCAGTATTGCGGTCTCACCGCTGAATAGGCTTGGCGAGCCTAAGGATGTGGCCCCTTTGGTGGGGTTCTTGGCTAGCGATGCCGGTGAGTGGGTTAATGGTCAGGTTATTCGTGTTAATGGTGGGTATATCTCTTAG 828 0.5399 MATSQKHTHSHSHSLSLPLQDRVAIVTGSSRGIGREIALHLASLGARIVVNYASNSSLADSLVAQINSDASVGGGAALPRAIAVRGDVSDPNGVKALFDSAEREFESAVHILVNSAGVTDSNYPTIANTPVEDFDRIFSVNTRGAFLCCKEAANRLVRGGRGRIILLSSSAVAALRPTMGSYTASKAAVEAMTHILAKELKGTGITANCVAPGPIATEMYFAGRTEEQIKASIAVSPLNRLGEPKDVAPLVGFLASDAGEWVNGQVIRVNGGYIS* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2256 275 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 9 274 - -
Amo06g2256 275 CDD THN_reductase-like_SDR_c 19 274 - -
Amo06g2256 275 Gene3D - 1 273 - -
Amo06g2256 275 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 9 274 - -
Amo06g2256 275 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 169 197 IPR020904 GO:0016491
Amo06g2256 275 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 20 273 IPR036291 -
Amo06g2256 275 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 22 213 - -
Amo06g2256 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Amo06g2256 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 162 170 IPR002347 -
Amo06g2256 275 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 182 201 IPR002347 -
Amo06g2256 275 PRINTS Glucose/ribitol dehydrogenase family signature 23 40 IPR002347 -
Amo06g2256 275 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Amo06g2256 275 PRINTS Glucose/ribitol dehydrogenase family signature 156 172 IPR002347 -
Amo06g2256 275 PRINTS Glucose/ribitol dehydrogenase family signature 182 201 IPR002347 -
Amo06g2256 275 PRINTS Glucose/ribitol dehydrogenase family signature 203 220 IPR002347 -
Amo06g2256 275 PRINTS Glucose/ribitol dehydrogenase family signature 237 257 IPR002347 -
Amo06g2256 275 Pfam Enoyl-(Acyl carrier protein) reductase 28 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2256 Amo-Chr6 80231403 80233614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2256 23 272 Acyl Lipid Metabolism Gene Families AT1G24360 34.387 3.88e-33 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2256 K00059 - cit:102615814 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2958 16 129160054 129167590 Amo06g2256 06 80231403 80233614 hybridization